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AT2G29080.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : FTSH protease 3
Curator
Summary (TAIR10)
encodes an FtsH protease that is localized to the mitochondrion
Computational
Description (TAIR10)
FTSH protease 3 (ftsh3); FUNCTIONS IN: ATP-dependent peptidase activity, ATPase activity; INVOLVED IN: proteolysis, protein catabolic process; LOCATED IN: mitochondrion, chloroplast thylakoid membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: FTSH protease 10 (TAIR:AT1G07510.1); Has 42068 Blast hits to 39734 proteins in 3332 species: Archae - 1581; Bacteria - 17420; Metazoa - 4814; Fungi - 3774; Plants - 3280; Viruses - 30; Other Eukaryotes - 11169 (source: NCBI BLink).
Protein Annotations
BioGrid:2806BRENDA:3.4.24.B20EC:3.4.24.-eggNOG:COG0465
eggNOG:KOG0731EMBL:AC005315EMBL:AK226271EMBL:AY063914
EMBL:BT002743EMBL:CP002685EnsemblPlants:AT2G29080EnsemblPlants:AT2G29080.1
entrez:817456Gene3D:3.40.50.300GeneID:817456Genevisible:Q84WU8
GO:GO:0004176GO:GO:0004222GO:GO:0005524GO:GO:0005739
GO:GO:0005743GO:GO:0006461GO:GO:0008053GO:GO:0008237
GO:GO:0008270GO:GO:0009535GO:GO:0009735GO:GO:0016021
GO:GO:0034982GO:GO:0042407GO:GO:0045041Gramene:AT2G29080.1
HAMAP:MF_01458hmmpanther:PTHR23076hmmpanther:PTHR23076:SF69HOGENOM:HOG000217277
InParanoid:Q84WU8InterPro:IPR000642InterPro:IPR003593InterPro:IPR003959
InterPro:IPR003960InterPro:IPR005936InterPro:IPR011546InterPro:IPR027417
KEGG:ath:AT2G29080KO:K08956MEROPS:M41.022ncoils:Coil
OMA:FRNSGREPaxDb:Q84WU8Pfam:PF00004Pfam:PF01434
Pfam:PF06480Pfam:Q84WU8PhylomeDB:Q84WU8PIR:T02738
PRIDE:Q84WU8PRO:PR:Q84WU8PROSITE:PS00674ProteinModelPortal:Q84WU8
Proteomes:UP000006548RefSeq:NP_850129.1scanprosite:PS00674SMART:SM00382
SMR:Q84WU8STRING:3702.AT2G29080.1SUPFAM:SSF140990SUPFAM:SSF52540
SwissPalm:Q84WU8TAIR:AT2G29080tair10-symbols:ftsh3TIGRfam:TIGR01241
TIGRFAMs:TIGR01241UniGene:At.24335UniProt:Q84WU8
Coordinates (TAIR10) chr2:-:12489911..12492999
Molecular Weight (calculated) 89357.90 Da
IEP (calculated) 7.29
GRAVY (calculated) -0.33
Length 809 amino acids
Sequence (TAIR10)
(BLAST)
001: MTMIFFSKLN RSISRSKGFL YGGGVRSAAR LLTSPGLEAA SVNEVEGGLG FIRRHFASLA SRKGLVNNDL IGVFANPRLR RFFSDEAPKK KNYENYFPKD
101: KQEPKSDQKS EHKEGSEKNE NENVGDMFMN RFQNLLIPLL ALAVFFSTFS FGSGEQQQIS FQEFKNKLLE PGLVDHIDVS NKSVAKVYVR STPKDQQTTD
201: VVHGNGNGIP AKRTGGQYKY YFNIGSVDSF EEKLEEAQEA LGVDRHEYVP VTYVSEMVWY QEFMRFAPTL LLLGTLIYGA RRMQGGLGVG GTGGKNGRGI
301: FNIGKATITR ADKHSKNKIY FKDVAGCDEA KQEIMEFVHF LKNPKKYEDL GAKIPKGALL VGPPGTGKTL LAKATAGESG VPFLSISGSD FMEMFVGVGP
401: SRVRHLFQEA RQAAPSIIFI DEIDAIGRAR GRGGLGGNDE RESTLNQLLV EMDGFGTTAG VVVLAGTNRP DILDKALLRP GRFDRQITID KPDIKGRDQI
501: FKIYLKKIKL DHEPSYYSQR LAALTPGFAG ADIANVCNEA ALIAARHEGA TVTMAHFESA IDRVIGGLEK KNRVISKLER RTVAYHESGH AVVGWFLEHA
601: EPLLKVTIVP RGTAALGFAQ YVPNENLLMT KEQLFDMTCM TLGGRAAEQV LIGKISTGAQ NDLEKVTKMT YAQVAVYGFS DKVGLLSFPP RDDGYDFSKP
701: YSNKTGAIID EEVRDWVAKA YERTVELVEE HKVKVAEIAE LLLEKEVLHQ DDLLKILGER PFKSAEVTNY DRFKSGFEET EKDSAATPTV EPVVDDGAPP
801: PFEPQVVPT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)