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AT3G58560.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : DNAse I-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DNAse I-like superfamily protein; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: DNAse I-like superfamily protein (TAIR:AT3G58580.1); Has 1372 Blast hits to 1328 proteins in 220 species: Archae - 0; Bacteria - 20; Metazoa - 540; Fungi - 247; Plants - 315; Viruses - 0; Other Eukaryotes - 250 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G58560-MONOMERBioGrid:10340EC:3.1.13.4eggNOG:COG5239
eggNOG:KOG0620EMBL:AF462845EMBL:AL137082EMBL:AY133538
EMBL:CP002686EnsemblPlants:AT3G58560EnsemblPlants:AT3G58560.1entrez:825025
Gene3D:3.60.10.10GeneID:825025Genevisible:Q8W0Z9GO:GO:0000932
GO:GO:0003723GO:GO:0004535GO:GO:0005634GO:GO:0005829
GO:GO:0005986GO:GO:0006351GO:GO:0006355GO:GO:0006397
GO:GO:0019252GO:GO:0046872Gramene:AT3G58560.1hmmpanther:PTHR12121
hmmpanther:PTHR12121:SF34HOGENOM:HOG000239764InParanoid:Q8W0Z9IntAct:Q8W0Z9
InterPro:IPR005135InterPro:IPR031615KEGG:ath:AT3G58560KO:K12603
ncoils:CoilOMA:RVIPAPCPaxDb:Q8W0Z9Pfam:PF03372
Pfam:PF15801Pfam:Q8W0Z9PhylomeDB:Q8W0Z9PIR:T45676
PRIDE:Q8W0Z9PRO:PR:Q8W0Z9ProteinModelPortal:Q8W0Z9Proteomes:UP000006548
RefSeq:NP_191415.2SMR:Q8W0Z9STRING:3702.AT3G58560.1SUPFAM:SSF56219
TAIR:AT3G58560UniGene:At.23801UniGene:At.67574UniProt:Q8W0Z9
Coordinates (TAIR10) chr3:-:21650880..21653896
Molecular Weight (calculated) 66764.90 Da
IEP (calculated) 7.40
GRAVY (calculated) -0.20
Length 602 amino acids
Sequence (TAIR10)
(BLAST)
001: MLSVIRVHLP SEIPIVGCEL TPYVLLRRPD KTPSTDDVPE SAPLEGHFLK YRWFRVQSDK KVAICSVHPS ETATLQCLGC LKSKVPVAKS YHCSTKCFSD
101: AWQHHRVLHE RAASAATEGN DEEELPRLNS SGSGSGVLST SVSLTNGSSS VYPSAITQKT GAGGETLVEV GRSKTYTPMA DDICHVLKFE CVVVNAETKQ
201: NVGLSCTILT SRVIPAPSPS PRRLISISGT DVTGHLDSNG RPLSMGTFTV LSYNILSDTY ASSDIYSYCP TWALAWTYRR QNLLREIVKY RADIVCLQEV
301: QNDHFEEFFL PELDKHGYQG LFKRKTNEVF IGNTNTIDGC ATFFRRDRFS HVKKYEVEFN KAAQSLTEAI IPVSQKKNAL NRLVKDNVAL IVVLEAKFGS
401: QAADNPGKRQ LLCVANTHVN VPHELKDVKL WQVHTLLKGL EKIAASADIP MLVCGDFNTV PASAPHTLLA VGKVDPLHPD LMVDPLGILR PHSKLTHQLP
501: LVSAYSQFAK MGGNVITEQQ RRRLDPASSE PLFTNCTRDF IGTLDYIFYT ADTLTVESLL ELLDEESLRK DTALPSPEWS SDHIALLAEF RCMPRARRNN
601: IL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)