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AT3G27290.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.592
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : RNI-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNI-like superfamily protein; BEST Arabidopsis thaliana protein match is: Ribonuclease inhibitor (TAIR:AT3G26000.1); Has 281 Blast hits to 274 proteins in 65 species: Archae - 0; Bacteria - 0; Metazoa - 155; Fungi - 4; Plants - 111; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Protein Annotations
BioGrid:7678eggNOG:ENOG410JSPXeggNOG:ENOG41108M0EMBL:AK221663
EMBL:AP000381EMBL:AY060566EMBL:BT006347EMBL:CP002686
EnsemblPlants:AT3G27290EnsemblPlants:AT3G27290.1entrez:822348Gene3D:3.80.10.10
GeneID:822348Genevisible:Q9LK24Gramene:AT3G27290.1HOGENOM:HOG000153035
InParanoid:Q9LK24IntAct:Q9LK24InterPro:IPR001810InterPro:IPR032675
KEGG:ath:AT3G27290OMA:VCIERCHPaxDb:Q9LK24Pfam:Q9LK24
PhylomeDB:Q9LK24PRIDE:Q9LK24PRO:PR:Q9LK24PROSITE:PS00198
ProteinModelPortal:Q9LK24Proteomes:UP000006548RefSeq:NP_566814.1SMR:Q9LK24
SUPFAM:SSF52047SUPFAM:SSF81383TAIR:AT3G27290UniGene:At.27371
UniProt:Q9LK24
Coordinates (TAIR10) chr3:-:10080038..10081265
Molecular Weight (calculated) 43127.10 Da
IEP (calculated) 4.57
GRAVY (calculated) -0.29
Length 382 amino acids
Sequence (TAIR10)
(BLAST)
001: MEVNYERLRG SYNDYRKLEL GLGEFGDDFV GLPDDPFCMN IRSTLNSISD WFHENQIGLV SEDHTLPEDP FCMRVRSTLN TISDWFHENQ KEIGVVDQML
101: FETLSWFYNN DDDDGDDDDD GGGGGEAHDA FELVLPYLEL KEILAVEVVC RSLRDSVGKE PFFWTSIDLN DSFLQYRVTD ESLLKLTRRA LGGVRCLNLG
201: GCVGITDYGL KQVLASNPHL TKLSVSGCLR LSTAGLVSTL RDLKSSNRLG VKSLITGGAL YFTKEQFKEL NLLLGGDAKV GLQERKKRFY TSCRSEFYLE
301: DDRVTDLEIC PWCEKPSLVF DCPADTCPLK GQYPYSKSSC RACVVCIERC HECGSCLNDC ENKPFCFAFS CVVCIEKRSN RL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)