suba logo
AT4G17950.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24872594 (2014): plastid
  • PMID:22550958 (2012): plastid
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : AT hook motif DNA-binding family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AT hook motif DNA-binding family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding motif (InterPro:IPR017956); BEST Arabidopsis thaliana protein match is: AT hook motif DNA-binding family protein (TAIR:AT5G46640.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IK2WeggNOG:ENOG4111IXNEMBL:AJ224119EMBL:AL021889
EMBL:AL161547EMBL:AY054610EMBL:AY081495EMBL:BR000349
EMBL:CP002687EnsemblPlants:AT4G17950EnsemblPlants:AT4G17950.1entrez:827520
GeneID:827520Genevisible:Q940I0GO:GO:0003677GO:GO:0005634
GO:GO:0005829GO:GO:0006351GO:GO:0006355Gramene:AT4G17950.1
hmmpanther:PTHR31500hmmpanther:PTHR31500:SF17HOGENOM:HOG000116506IntAct:Q940I0
InterPro:IPR005175InterPro:IPR017956iPTMnet:Q940I0KEGG:ath:AT4G17950
ncoils:CoilOMA:RSQGQQHPaxDb:Q940I0Pfam:PF03479
Pfam:Q940I0Pfscan:PS51742PhylomeDB:Q940I0PIR:T05081
PIR:T52291PRIDE:Q940I0PRO:PR:Q940I0PROSITE:PS51742
ProteinModelPortal:Q940I0Proteomes:UP000006548RefSeq:NP_567546.1SMART:SM00384
SMR:Q940I0STRING:3702.AT4G17950.1SUPFAM:SSF117856TAIR:AT4G17950
UniGene:At.119UniProt:Q940I0
Coordinates (TAIR10) chr4:-:9967295..9969007
Molecular Weight (calculated) 46279.60 Da
IEP (calculated) 10.06
GRAVY (calculated) -0.86
Length 439 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSREIHHQQ QQQQQQQQQQ QQQQQHLQQQ QQPPPGMLMS HHNSYNRNPN AAAAVLMGHN TSTSQAMHQR LPFGGSMSPH QPQQHQYHHP QPQQQIDQKT
101: LESLGFDGSP SSVAATQQHS MRFGIDHQQV KKKRGRPRKY AADGGGGGGG GSNIALGLAP TSPLPSASNS YGGGNEGGGG GDSAGANANS SDPPAKRNRG
201: RPPGSGKKQL DALGGTGGVG FTPHVIEVKT GEDIATKILA FTNQGPRAIC ILSATGAVTN VMLRQANNSN PTGTVKYEGR FEIISLSGSF LNSESNGTVT
301: KTGNLSVSLA GHEGRIVGGC VDGMLVAGSQ VQVIVGSFVP DGRKQKQSAG RAQNTPEPAS APANMLSFGG VGGPGSPRSQ GQQHSSESSE ENESNSPLHR
401: RSNNNNSNNH GIFGNSTPQP LHQIPMQMYQ NLWPGNSPQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)