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AT4G36650.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : plant-specific TFIIB-related protein
Curator
Summary (TAIR10)
Encodes a protein with similarity to the general transcription factor TFIIB. pBRP binds rDNA sequences in vitro. pBRP has been localized to the outer face of the plastid membrane with GFP fusion however, under conditions of proteosome inhibition it is found in the nucleus.
Computational
Description (TAIR10)
plant-specific TFIIB-related protein (PBRP); FUNCTIONS IN: RNA polymerase II transcription factor activity, rDNA binding; INVOLVED IN: translational initiation, regulation of transcription, DNA-dependent, transcription initiation; LOCATED IN: plastid outer membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor TFIIB related (InterPro:IPR000812), Transcription factor TFIIB, cyclin-related (InterPro:IPR013150), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: transcription factor IIB (TAIR:AT2G41630.1); Has 1560 Blast hits to 1559 proteins in 341 species: Archae - 524; Bacteria - 1; Metazoa - 239; Fungi - 259; Plants - 166; Viruses - 3; Other Eukaryotes - 368 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1405eggNOG:KOG1597EMBL:AJ295068EMBL:AL161589
EMBL:AY463603EMBL:BT006470EMBL:CP002687EMBL:Z99708
EnsemblPlants:AT4G36650EnsemblPlants:AT4G36650.1entrez:829817ExpressionAtlas:O23215
Gene3D:1.10.472.10GeneID:829817GO:GO:0000182GO:GO:0003743
GO:GO:0006352GO:GO:0006355GO:GO:0008270GO:GO:0009527
Gramene:AT4G36650.1hmmpanther:PTHR11618hmmpanther:PTHR11618:SF26HOGENOM:HOG000114088
InterPro:IPR000812InterPro:IPR013150InterPro:IPR013763OMA:STINWSF
PANTHER:PTHR11618Pfam:PF00382PhylomeDB:O23215PIR:G85432
PRINTS:PR00685Proteomes:UP000006548RefSeq:NP_195383.1SMART:SM00385
SMR:O23215STRING:3702.AT4G36650.1SUPFAM:SSF47954TAIR:AT4G36650
tair10-symbols:ATPBRPtair10-symbols:PBRPUniGene:At.48945UniProt:O23215
Coordinates (TAIR10) chr4:-:17283283..17285527
Molecular Weight (calculated) 55674.80 Da
IEP (calculated) 6.14
GRAVY (calculated) -0.46
Length 503 amino acids
Sequence (TAIR10)
(BLAST)
001: MKCPYCSSAQ GRCTTTSSGR SITECSSCGR VMEERQTQNH HLFHLRAQDT PLCLVTSDLQ TAAQPSPEDE EDPFEPTGFI TAFSTWSLEP SPIFARSSLS
101: FSGHLAELER TLELASSTSN SNSSTVVVDN LRAYMQIIDV ASILGLDCDI SEHAFQLFRD CCSATCLRNR SVEALATACL VQAIREAQEP RTLQEISIAA
201: NVQQKEIGKY IKILGEALQL SQPINSNSIS VHMPRFCTLL QLNKSAQELA THIGEVVINK CFCTRRNPIS ISAAAIYLAC QLEDKRKTQA EICKITGLTE
301: VTLRKVYKEL LENWDDLLPS NYTPAVPPEK AFPTTTISTT RSTTPRAVDP PEPSFVEKDK PSAKPIETFD HTYQQPKGKE DKQPKFRQPW LFGTASVMNP
401: AEMISEPAKP NAMDYEKQQL DKQQQQQLGD KETLPIYLRD HNPFPSNPSP STGISTINWS FRPSVVPGSS SNLPVIHPPK LPPGYAEIRG SGSRNADNPH
501: GDF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)