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AT1G54140.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : TATA binding protein associated factor 21kDa subunit
Curator
Summary (TAIR10)
putative TATA binding protein associated factor 21kDa
Computational
Description (TAIR10)
TATA binding protein associated factor 21kDa subunit (TAFII21); FUNCTIONS IN: transcription initiation factor activity, DNA binding; INVOLVED IN: transcription initiation; LOCATED IN: transcription factor TFIID complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor TAFII-31 (InterPro:IPR003162), Histone-fold (InterPro:IPR009072); Has 434 Blast hits to 434 proteins in 170 species: Archae - 0; Bacteria - 2; Metazoa - 206; Fungi - 130; Plants - 53; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).
Protein Annotations
BioGrid:27079eggNOG:COG5094eggNOG:KOG3334EMBL:AC006577
EMBL:AF238327EMBL:AY087886EMBL:AY463624EMBL:BT025537
EMBL:CP002684EnsemblPlants:AT1G54140EnsemblPlants:AT1G54140.1entrez:841854
Gene3D:1.10.20.10GeneID:841854Genevisible:Q9SYH2GO:GO:0005634
GO:GO:0006352GO:GO:0006355Gramene:AT1G54140.1hmmpanther:PTHR12595
hmmpanther:PTHR12595:SF6HOGENOM:HOG000005834InParanoid:Q9SYH2IntAct:Q9SYH2
InterPro:IPR003162InterPro:IPR009072KEGG:ath:AT1G54140KO:K03133
OMA:NYQLLAPPaxDb:Q9SYH2Pfam:PF02291Pfam:Q9SYH2
PhylomeDB:Q9SYH2PIR:E96582PRIDE:Q9SYH2PRO:PR:Q9SYH2
ProteinModelPortal:Q9SYH2Proteomes:UP000006548Reactome:R-ATH-674695Reactome:R-ATH-73776
Reactome:R-ATH-73779Reactome:R-ATH-75953Reactome:R-ATH-76042RefSeq:NP_175816.1
SMR:Q9SYH2STRING:3702.AT1G54140.1SUPFAM:SSF47113TAIR:AT1G54140
tair10-symbols:TAF9tair10-symbols:TAFII21UniGene:At.65937UniProt:Q9SYH2
Coordinates (TAIR10) chr1:-:20214076..20214869
Molecular Weight (calculated) 20598.20 Da
IEP (calculated) 4.40
GRAVY (calculated) -0.74
Length 183 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGEGEEDVP RDAKIVKSLL KSMGVEDYEP RVIHQFLELW YRYVVEVLTD AQVYSEHASK PNIDCDDVKL AIQSKVNFSF SQPPPREVLL ELAASRNKIP
101: LPKSIAGPGV PLPPEQDTLL SPNYQLVIPK KSVSTEPEET EDDEEMTDPG QSSQEQQQQQ QQTSDLPSQT PQRVSFPLSR RPK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)