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AT5G25150.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : TBP-associated factor 5
Curator
Summary (TAIR10)
Encodes a putative TATA-binding-protein associated factor TAF5. TAFs are subunits of the general transcription factor IID (TFIID).
Computational
Description (TAIR10)
TBP-associated factor 5 (TAF5); FUNCTIONS IN: transcription regulator activity, nucleotide binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: guard cell, root, inflorescence, cultured cell, leaf; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781), TFIID subunit, WD40-associated region (InterPro:IPR007582); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G49660.1); Has 114463 Blast hits to 42274 proteins in 991 species: Archae - 68; Bacteria - 11258; Metazoa - 46869; Fungi - 25620; Plants - 15010; Viruses - 3; Other Eukaryotes - 15635 (source: NCBI BLink).
Protein Annotations
BioGrid:17861eggNOG:ENOG410XPM5eggNOG:KOG0263EMBL:AC006259
EMBL:AY463620EMBL:CP002688EnsemblPlants:AT5G25150EnsemblPlants:AT5G25150.1
entrez:832586Gene3D:2.130.10.10GeneID:832586Genevisible:Q6S7B0
GO:GO:0005634GO:GO:0006351GO:GO:0006355Gramene:AT5G25150.1
hmmpanther:PTHR19879hmmpanther:PTHR19879:SF1HOGENOM:HOG000212424InParanoid:Q6S7B0
IntAct:Q6S7B0InterPro:IPR001680InterPro:IPR007582InterPro:IPR015943
InterPro:IPR017986InterPro:IPR019775InterPro:IPR020472iPTMnet:Q6S7B0
KEGG:ath:AT5G25150KO:K03130OMA:INDHIEMPaxDb:Q6S7B0
Pfam:PF00400Pfam:PF04494Pfam:Q6S7B0Pfscan:PS50082
Pfscan:PS50294PhylomeDB:Q6S7B0PRIDE:Q6S7B0PRINTS:PR00320
PRO:PR:Q6S7B0PROSITE:PS00678PROSITE:PS50082PROSITE:PS50294
ProteinModelPortal:Q6S7B0Proteomes:UP000006548Reactome:R-ATH-674695Reactome:R-ATH-73776
Reactome:R-ATH-73779Reactome:R-ATH-75953Reactome:R-ATH-76042RefSeq:NP_197897.3
scanprosite:PS00678SMART:SM00320SMR:Q6S7B0STRING:3702.AT5G25150.1
SUPFAM:SSF160897SUPFAM:SSF50978TAIR:AT5G25150tair10-symbols:TAF5
UniGene:At.43447UniProt:Q6S7B0
Coordinates (TAIR10) chr5:+:8677117..8682058
Molecular Weight (calculated) 74417.60 Da
IEP (calculated) 7.12
GRAVY (calculated) -0.44
Length 669 amino acids
Sequence (TAIR10)
(BLAST)
001: MDPEQINEFV VGYLKKKGFS SAAKDLESYH HQNNNGSSFT SVDYHNDPEL TKLIRSFSQQ EDDPTRYREG YSKLRSWAYN SLDLYKHELL RVMYPVFIHC
101: YMDLVGKGHT QEARAFFNSF RKDHEMVHLR DLQKLEGVLS PSHLEEMEFA RSLRKSKVNI KFCQYSYELL LQYLHSTVST LMLGIINEHI NFQVYSGQPT
201: SSSDDIEAVT IVGSFQDTAN HINQKEIQWG LLEDSLEDRL EKTGGLLSDS EKGQGESKDG DADDSKKRST EIGKQGSSLK KLKKDKAGNA TAKVARLETI
301: TVSPAPRVKP ELALPVMSTD VEQSILEDLR NRVQLSSVAM PSVSFYTFVN THNGLNCSSI SHDGSLVAGG FSDSSIKVWD MAKIGQAGSG ALQAENDSSD
401: QSIGPNGRRS YTLLLGHSGP VYSATFSPPG DFVLSSSADT TIRLWSTKLN ANLVCYKGHN YPVWDAQFSP FGHYFASCSH DRTARIWSMD RIQPLRIMAG
501: HLSDVDCVQW HPNCNYIATG SSDKTVRLWD VQTGECVRIF IGHRSMVLSL AMSPDGRYMA SGDEDGTIMM WDLSTARCIT PLMGHNSCVW SLSYSGEGSL
601: LASGSADCTV KLWDVTSSTK LTKAEEKNGN SNRLRSLRTF PTKSTPVHAL RFSRRNLLFA AGAISKPAN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)