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AT3G04490.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
golgi 0.993
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38092.1); Has 75 Blast hits to 64 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 36; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XNNNeggNOG:KOG4541EMBL:CP002686EnsemblPlants:AT3G04490
EnsemblPlants:AT3G04490.1entrez:819605GeneID:819605Gramene:AT3G04490.1
hmmpanther:PTHR12596hmmpanther:PTHR12596:SF1InParanoid:F4J3Q2InterPro:IPR016024
iPTMnet:F4J3Q2KEGG:ath:AT3G04490OMA:MFQILSWPaxDb:F4J3Q2
PRIDE:F4J3Q2ProteinModelPortal:F4J3Q2Proteomes:UP000006548RefSeq:NP_187099.6
STRING:3702.AT3G04490.1SUPFAM:SSF48371TAIR:AT3G04490UniGene:At.43641
UniProt:F4J3Q2
Coordinates (TAIR10) chr3:+:1200816..1209713
Molecular Weight (calculated) 123941.00 Da
IEP (calculated) 5.44
GRAVY (calculated) 0.06
Length 1118 amino acids
Sequence (TAIR10)
(BLAST)
0001: MLGFSNGSGG GGVGAEDLAQ LQSTMRAIEL ACSYIQINSN PVAAEATILS LHQSPQPYKA CRYILENSQV ANARFQAAAA IRESAIREWS FLATDDKGGL
0101: ISFCLGYVMQ HANSSEGYVL SKVSSVAAQL MKRGWLEFTP AQKEVFFYQI NQAILGSHGL DVQFIGVNFL ESLVSEFSPS TSSAMGLPRE FHENCRKSLE
0201: QNFLKSFYQW AQDAALSVTS KIIESHSSVP EVKVCNATLR LMHQILNWEF PYSKGGTRAS INVFSDGIRP DNALSRKTEC VIVQPGASWC DVLLSSSHVG
0301: WLINFYSSVR QKFDLEGYWL DCPVAVSARK LIVQLCSLAG EIFPSNNVQM RDQHLLLLLT GVLPWIDPPD VISKEIEEGR SGSEMIDGCR ALLSIGTVTT
0401: PVVFDQLLRS LRPFGTLTLL SMLMGEVVKV LMANSTDEET WSYEARDILL DTWTTLLTSM DGSGGNAWLP PEGIHAAASL FSLIVESELK VASASATTED
0501: DADCLASVSA MDERLGSYAL IARAAVDATI PFLAKLFSDH VARLHQGRGT VDPTETLEEV YSLLLIIGHV LADEGEGETA LVPDALQSHF VDVVEANNHP
0601: VVVLSSSIIK FAEQCLDAEM RSSIFSPRLM EAVIWFLARW SFTYLLLVEE CNLGSNKLQS LPSRACLFTY FNEHNQGKFV LDIIVRISLT SLTSYPGEKD
0701: LQELTCFQLL HALVRRRNIC FHLLSLDSWR NLANAFANDK TLFLLNSVSQ RSLAQTLVLS AYGMRSSDAS NQYVKDLMAH MTSSLVDLSN SSDLKNLAQQ
0801: PDIIMLVSCV LERLRGAASA TEPRTQRAIY EMGLSVMNPV LRLLEVYKHE ISLSLSSTLL NEAKTEKYKD LRALLQLLSH LCSKDMVDFS SDSIETQSTN
0901: ISQVVYFGLH IITPLITLEL LKYPKLCFDY FSLISHMLEV YPETLAQLNN DAFSHVLTTV DFGLHQQDVD IVTMCLRALK ALASYHYKEK NAGNSGLGSH
1001: AAGHTDPNGV FHEGILSRFL RTLLHFLLFE DYSTDLVSTA ADALFPLILC EPNLYQGLGN ELIEKQANPN FKTRLANALQ VLTTSNQLSS SLDRLNYQRF
1101: RKNLNNFLVE VRGFLKTR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)