AT3G04490.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 0.993 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38092.1); Has 75 Blast hits to 64 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 36; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:1200816..1209713 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 123941.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.44 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.06 | ||||||||||||||||||||||||||||
| Length | 1118 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MLGFSNGSGG GGVGAEDLAQ LQSTMRAIEL ACSYIQINSN PVAAEATILS LHQSPQPYKA CRYILENSQV ANARFQAAAA IRESAIREWS FLATDDKGGL 0101: ISFCLGYVMQ HANSSEGYVL SKVSSVAAQL MKRGWLEFTP AQKEVFFYQI NQAILGSHGL DVQFIGVNFL ESLVSEFSPS TSSAMGLPRE FHENCRKSLE 0201: QNFLKSFYQW AQDAALSVTS KIIESHSSVP EVKVCNATLR LMHQILNWEF PYSKGGTRAS INVFSDGIRP DNALSRKTEC VIVQPGASWC DVLLSSSHVG 0301: WLINFYSSVR QKFDLEGYWL DCPVAVSARK LIVQLCSLAG EIFPSNNVQM RDQHLLLLLT GVLPWIDPPD VISKEIEEGR SGSEMIDGCR ALLSIGTVTT 0401: PVVFDQLLRS LRPFGTLTLL SMLMGEVVKV LMANSTDEET WSYEARDILL DTWTTLLTSM DGSGGNAWLP PEGIHAAASL FSLIVESELK VASASATTED 0501: DADCLASVSA MDERLGSYAL IARAAVDATI PFLAKLFSDH VARLHQGRGT VDPTETLEEV YSLLLIIGHV LADEGEGETA LVPDALQSHF VDVVEANNHP 0601: VVVLSSSIIK FAEQCLDAEM RSSIFSPRLM EAVIWFLARW SFTYLLLVEE CNLGSNKLQS LPSRACLFTY FNEHNQGKFV LDIIVRISLT SLTSYPGEKD 0701: LQELTCFQLL HALVRRRNIC FHLLSLDSWR NLANAFANDK TLFLLNSVSQ RSLAQTLVLS AYGMRSSDAS NQYVKDLMAH MTSSLVDLSN SSDLKNLAQQ 0801: PDIIMLVSCV LERLRGAASA TEPRTQRAIY EMGLSVMNPV LRLLEVYKHE ISLSLSSTLL NEAKTEKYKD LRALLQLLSH LCSKDMVDFS SDSIETQSTN 0901: ISQVVYFGLH IITPLITLEL LKYPKLCFDY FSLISHMLEV YPETLAQLNN DAFSHVLTTV DFGLHQQDVD IVTMCLRALK ALASYHYKEK NAGNSGLGSH 1001: AAGHTDPNGV FHEGILSRFL RTLLHFLLFE DYSTDLVSTA ADALFPLILC EPNLYQGLGN ELIEKQANPN FKTRLANALQ VLTTSNQLSS SLDRLNYQRF 1101: RKNLNNFLVE VRGFLKTR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)