AT1G12930.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.500 nucleus 0.500 ASURE: cytosol,nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ARM repeat superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exportin-1/Importin-beta-like (InterPro:IPR013598), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G62600.1); Has 493 Blast hits to 488 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 237; Fungi - 137; Plants - 74; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:4398588..4405495 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 110536.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.94 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.21 | ||||||||||||||||||||||||||||||||
| Length | 1005 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MELQRKVAEA IHVLNHDPES SNRVAANQWL VQFQLTPAAW DVSTSLLTSP IVSLFDLQFF AAQILRRKIQ NEASNLQSTA KDALLNALLL AAKRYSSGVP 0101: QLLTQICLAL SALLLHSDPY SKPFDKLMFA LQNLQAHDDG NVVLLELLTV LPEEISDTRH FSHHSDLRQE LLSHTSMVLD FLLQQSENQF VSPLYPHDNN 0201: RKILRCLLSW VRAGCFSEIP QGAVPSHPLL NYVFNALQGT TFDLAIEVLV ELVTRHEDLP QVLLYKVQFL RDTLLKPALI NADLKIISGL ACLMSEIGQA 0301: APCLIVEASS EALILTDAIL SCVTFPSEDW EIADSTVQFW STFATYILSL GGNRQNDRTR VKDTFLPVFS ALVDALVLRA QVDEFTSSDE SPGLDLPDGL 0401: LHFRNNLLEL LVDICQLLHP TTFVSKLFFG GVPSSSVSMP LREIEAKLFA LTAVSEIILQ EGEAFDFALI MQLVSAFSVR PSSELKGFIS VVYRSLADVV 0501: GSYSRWISVF PSNARPLLLF LAGGISEPIC SHACASALRK ICEDAPAVIQ ETSNLDILMW IGECLEQWDL TLEDEEEVIT AITVILGSVA NKELQNKLLT 0601: QLLSSSYGVL SKLVDEDAES SGRQSPATYT RMLSSVTRGL YRIGTVFSHL ATSLPSVPVA DGPILSLLTV FWPILEKLFR SEHMESGSLA AAACRALSVA 0701: VQSSGEHFML LLPSVLDCLS RNFLSFQSQE CYIRTACVIA EEFCHKEEYG SLFITTFERF TQASSLMGIN SSYICDQEPD LVEAYVNFAS ALIRSCHKEL 0801: LGTSGTLLEI SFHKAAICCT AMHRGAALAA MSYLSGFLEV SLSSMIETVN SISDGSFSVV SVQVVSHCGE GLLSNLVYAL LGVAAMSRVH KCSTILQQLA 0901: AICSLCERTS WKGMLCWKSL QGWLNSAVWA LPSEYLKQGE AESIVREWSE ALGGAGIDYL ENKSCNFGSN NSSGGHMQGK HGRTLKRLVR DFADSHRNDP 1001: NPNII |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)