AT1G27750.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : nucleic acid binding | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
nucleic acid binding; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Spen paralogue and orthologue SPOC, C-terminal (InterPro:IPR012921), RNA recognition motif, RNP-1 (InterPro:IPR000504); Has 48205 Blast hits to 29216 proteins in 1385 species: Archae - 84; Bacteria - 5862; Metazoa - 21406; Fungi - 6566; Plants - 7294; Viruses - 1352; Other Eukaryotes - 5641 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:9657425..9661750 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 117453.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.85 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.36 | ||||||||||||||||||||||||||||
| Length | 1075 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MACAEQPIKK RRLYESIPES HPPPPPQLES QSPSTVVSSF PAPVTPSPPS QEEIQTRSRN REEIRRVHDC YKRLKSCVAQ RDGGGRSANL EQAYRSLISA 0101: SRGCTSVKRL VADLVPRYAL YCPTAIGDAV QAVIDMHNFS LEALKRGQDA DGVAFQTAKA CIFGLVDLCS AALSKKTSSP GARDICSAVF RNVLTFFVLS 0201: FEGKNIFQIV DKSDLKLQDP DEIFSQLMQK LSDGNSLPLI KLSQFRVLAL LKVFFNFPKK SIATCFGFFN SSSTEDVATG RYLITHMTEK INDIDAASIE 0301: PEVDENSGQT GSNNIEATGK NAEGLNGVQE ASNSLTSCLL EMVIRKSSSI GRWAFFQYKK ICSLSSFVDI SSAVTSLEGI FGFVGKNIKL EDCQMDSDED 0401: DYGKFSVSHV KPHSSADNDV RSSAGSVYDA GGSRSMDFET VDQRDLSCGR SSVPRGLLNQ HTPSPSARGP SDLRSNSTDR RNNFVLAGSP VYQAVPHGPS 0501: SGQIAWYLDG DPTAFDIFPA SGQLWLGYLG PDETEGHLRF QLDRYGPVDR FFFDPVKGFA LAEYRSIIDA IRAREYLRAQ FPWRIKFMDI GVGARGSLNG 0601: VAYGYCTHLY IGGISSQWER DEIVHESRQA LYKGPRMVTD LYYEHALLME FDTPDDAAIV MAHLRFFRGE KSKFHLASIN RPLPHEDGGS HPERHLQVPP 0701: SSKQDSGSGE YVSPLMSTDN HCNSVPPGAT FQQNWPAAGS TLVNSAQGVS GTPPCVPIPA PGQPAVPATP TSQIPPSPFV QQPIYPPPNS SWDTRSLISP 0801: SGDAVATSSQ MQGPPAQQVS GPFMPPPVHP VSQPQGPQVQ QFDQLYPPPP LGHSLPSVLQ PPLQPQSQPP EPPPEMMPPP PQALPPPLPH SHPPLVPPPP 0901: FSPLLSPRLP PMVTQLCGSE ASKQNIGHQW QGALSKSGVH YSTIIAQRLE SDICKYIIGS PEPVQWPVKL DMTKRTDMKN VKATFANTQP HKREVCQLIP 1001: AAFSDRKGLQ DFITYLKQRD CAGVIKIPAS SPMWARHLFI LPHSQETCSL LSVSPSSSEC LIGLVLPKDT NAEAS |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)