AT2G26000.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : zinc finger (C3HC4-type RING finger) family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
BRAP2 RING ZnF UBP domain-containing protein 2 (BRIZ2); FUNCTIONS IN: catalytic activity, zinc ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: BRCA1-associated 2 (InterPro:IPR011422), Zinc finger, UBP-type (InterPro:IPR001607), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: zinc finger (ubiquitin-hydrolase) domain-containing protein (TAIR:AT2G42160.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:11082403..11085137 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51636.50 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.61 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.57 | ||||||||||||||||||||||||||||||||||||||||
| Length | 461 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNSASVSGES SLSDMIQTVH FSSGNPRIGE TRGVMHLISD NAVSSSSSSS SSNLPIGRNP LVCVLGVPNH MTYADFCQFC GSFIQHILDM RTVRNDDIEN 101: RYSILIRFDS QESTDTFFQH FRGKQFNSLD EDVCRLLFAL DVQFTGYSGS IDHTQPSAAG PIEQPTCPVC LERLDQDTGG ILTTMCNHSF HCSCISNWPD 201: SSCPVCRYCQ QQPENSVCCV CQTTENLWMC VICGVVGCGR YKEGHARRHW EETEHCYSLE LETQRVWDYA GDNYVHRLIQ SKTDGKLVEL NSHGSLSKDG 301: CGSCEYSDSG MTDALLNSKV DMYFEKLLQN VKEETEQKIS EAASKAISQR LQKLQTRFDR CVKEKQFLED LNENLVKNKD VWSTKITEMK EREKKAVRAK 401: DEKIQGLEEQ LGNLMAQMDG ESEVSETKEV QDATVSTTNT SSSGAGNVIH ANKKKSNRRK G |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)