AT1G17930.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Aminotransferase-like, plant mobile domain family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Aminotransferase-like, plant mobile domain family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase-like, plant mobile domain (InterPro:IPR019557); BEST Arabidopsis thaliana protein match is: Aminotransferase-like, plant mobile domain family protein (TAIR:AT2G25010.1); Has 691 Blast hits to 683 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 691; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:6166638..6168432 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 54700.10 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.56 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.48 | ||||||||||||||||||||||||||||
| Length | 478 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPVLYEQDKH VSSAILTGQE RGVLRCQERT SLLHHWKLTK EQIALVEKAG FGWFRLVGSI SLNNSLISAL VERWRRETNT FHFPCGEMTI TLDEVSLILG 101: LAVDGKPVVG VKEKDEDPSQ VCLRLLGKLP KGELSGNRVT AKWLKESFAE CPKGATMKEI EYHTRAYLIY IVGSTIFATT DPSKISVDYL ILFEDFEKAG 201: EYAWGAAALA FLYRQIGNAS QRSQSIIGGC LTLLQCWSYF HLNIDRPKRT TRQFPLALLW KGRQQSRSKN DLFKYRKALD DLDPSNVSWC PFEGDLDIVP 301: QSFKDNLLLG RSRTKLIGPK VVEWHFPDRC MKQFGLCQVI PGEVPPRKNE KNHDEDLLED MNTADEEWMR RRENIVENGG GNGDESEYMQ WFNSITVPKL 401: HRDTSLEADI MNVQAAILQF DEVASTLSLE DLHPEEREAI EEAVMSMSNA LRVGDWYEAS TTNKRKRREE QQQTDWSE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)