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AT3G15970.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21189294 (2010): nucleus nuclear matrix
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NUP50 (Nucleoporin 50 kDa) protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NUP50 (Nucleoporin 50 kDa) protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular transport; LOCATED IN: nuclear pore; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ran binding protein 1 (InterPro:IPR000156), Pleckstrin homology-type (InterPro:IPR011993), Nuclear pore complex, NUP2/50/61 (InterPro:IPR015007); BEST Arabidopsis thaliana protein match is: NUP50 (Nucleoporin 50 kDa) protein (TAIR:AT1G52380.1); Has 4078 Blast hits to 2719 proteins in 441 species: Archae - 18; Bacteria - 1103; Metazoa - 1379; Fungi - 710; Plants - 228; Viruses - 8; Other Eukaryotes - 632 (source: NCBI BLink).
Protein Annotations
BioGrid:6175eggNOG:COG5171eggNOG:KOG0864EMBL:AB012247
EMBL:AK118302EMBL:AY084443EMBL:CP002686EnsemblPlants:AT3G15970
EnsemblPlants:AT3G15970.1entrez:820841Gene3D:2.30.29.30GeneID:820841
Genevisible:Q9LW88GO:GO:0005643GO:GO:0005654GO:GO:0005829
GO:GO:0015031GO:GO:0046907GO:GO:0051028Gramene:AT3G15970.1
hmmpanther:PTHR23138hmmpanther:PTHR23138:SF99HOGENOM:HOG000241369InParanoid:Q9LW88
IntAct:Q9LW88InterPro:IPR000156InterPro:IPR011993InterPro:IPR015007
iPTMnet:Q9LW88KEGG:ath:AT3G15970KO:K15304OMA:MFEYLEG
PaxDb:Q9LW88Pfam:PF00638Pfam:PF08911Pfam:Q9LW88
Pfscan:PS50196PhylomeDB:Q9LW88PRIDE:Q9LW88PRO:PR:Q9LW88
PROSITE:PS50196ProteinModelPortal:Q9LW88Proteomes:UP000006548RefSeq:NP_566532.1
SMART:SM00160SMR:Q9LW88STRING:3702.AT3G15970.1SUPFAM:SSF50729
TAIR:AT3G15970UniGene:At.38962UniProt:Q9LW88
Coordinates (TAIR10) chr3:-:5408982..5410379
Molecular Weight (calculated) 49110.90 Da
IEP (calculated) 4.46
GRAVY (calculated) -0.74
Length 465 amino acids
Sequence (TAIR10)
(BLAST)
001: MGDSDNAIPF SRKRTALKEL SRDNPGLDDD DEDTSALESG TFNTASKEVL ASRRIIRVRR TDRSATAPPA SNPFTGIRLV PFTAPAPSTA AAETTKPLSA
101: GKQETLADGR SDATKETDGD SKEKSDAIDA VGKQETQGDE ISAKTKDIID GGEKEMSEAV NSVEGGGAVN KNEDEIKTTM VTEVAAGEET VKDDNNNSNT
201: VEGSDCVVKD TGGNQTEKEG KEGDGNEDTE KNGDSGALSS FHQHSSSKNA FTGLASTGFS ASSFSFGLVP QEGSTGSGSE QSSFSFGQAN NGNSSLFGAS
301: VATSITTKST ETTTAFPSKQ DVSVETGEEN EKAAFTADSV MFEYLEGGWK ERGKGELKVN ISTTENRKAR LVMRSKGNYR LTLNASLYPE MKLAKMDKKG
401: ITFACVNSVS DAKDGLSTLA LKFKDPTVVE EFRAVIEEHK DSKPSVAEAA APLKTPENSP SAEDA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)