AT4G00830.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G52660.2); Has 49171 Blast hits to 28860 proteins in 1092 species: Archae - 87; Bacteria - 2901; Metazoa - 24152; Fungi - 5892; Plants - 6872; Viruses - 415; Other Eukaryotes - 8852 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:352782..354965 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 55139.30 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.34 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.92 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 495 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSDARDNDDR VDFEEGSYSE MEDEVEEEQV EEYEEEEEED DDDDDVGNQN AEEREVEDYG DTKGGDMEDV QEEIAEDDDN HIDIETADDD EKPPSPIDDE 101: DREKYSHLLS LPPHGSEVFI GGLPRDVGEE DLRDLCEEIG EIFEVRLMKD RDSGDSKGYA FVAFKTKDVA QKAIEELHSK EFKGKTIRCS LSETKNRLFI 201: GNIPKNWTED EFRKVIEDVG PGVENIELIK DPTNTTRNRG FAFVLYYNNA CADYSRQKMI DSNFKLEGNA PTVTWADPKS SPEHSAAAAQ VKALYVKNIP 301: ENTSTEQLKE LFQRHGEVTK IVTPPGKGGK RDFGFVHYAE RSSALKAVKD TERYEVNGQP LEVVLAKPQA ERKHDPSSYS YGAAPTPAPF VHPTFGGFAA 401: APYGAMGAGL GIAGSFSQPM IYGRGAMPTG MQMVPMLLPD GRVGYVLQQP GMPMAAAPPQ RPRRNDRNNG SSGGSGRDNS HEHDGNRGGR RYRPY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)