AT2G02160.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : CCCH-type zinc finger family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CCCH-type zinc finger family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); Has 10885 Blast hits to 7444 proteins in 511 species: Archae - 23; Bacteria - 415; Metazoa - 5228; Fungi - 922; Plants - 581; Viruses - 184; Other Eukaryotes - 3532 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:553407..555899 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 75835.50 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.86 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.24 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 669 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFAPATQPQQ QHEQKKQSET VSSAEEDALK WNTDCVYFLA SPLTCKKGPE CEYRHSEYAR MNPRDCYYWL NGNCLNPKCG FRHPPLEGLL GNQGGAPAVS 101: VQPIHATAQH PSVAKQPVPC LFFQKGMCMK GDMCSFLHTP NPAAYKKQHP VEAKPATDPQ CSKKPIENNT EEKKLPDVNL SKVVKGHTDI SAAPRVASTG 201: LRDSRSVEGY IPNHVGYEPV VQRKGPGFPS FTEGGHSTQL LQKYGSDDNN SFHNGKDADD VLRESSPGFD VLVDNEAGDS EYYHVEDRYG RRSQERGNSE 301: YDPDFSAIAD GDKEALREQR FDSYDRREDR GWGHRRVSSE REDRLDRRVY AEDERSENIL ESDLRYRLAK QRKGNGMRLS VGGHDYAAPD SSMDRGYRES 401: RRDTPRENSI SSSRLQGRIK LRERSNGEEG HHFDRRSERG RDRSELPSQG RLRDRIKGRL EENHSGNQER GFGAPWARRR EMEDERKSAP KSSREESKPE 501: PSLGKRKSFE EDHHSHKRSR DSFAAPLPFS EILKRKKAAA SGGSRNNNKD ETISKEEAGD EIKLITEEKT EVVSEPKAEV EEEGTVMEEE EIVGEEVYEG 601: NEDEQAYEGD ELNGEYYYEE GYEEEGGEYA YEEGEEVVYA AEEGEEEATE GGEGEGEEDI EKKTVEMLS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)