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AT3G49601.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27177187 (2016): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: mRNA splicing factor, Cwf21 (InterPro:IPR013170); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111F3MeggNOG:KOG1869EMBL:CP002686EnsemblPlants:AT3G49601
EnsemblPlants:AT3G49601.1entrez:6241216GeneID:6241216Gramene:AT3G49601.1
hmmpanther:PTHR32093hmmpanther:PTHR32093:SF13InParanoid:B3H6J5InterPro:IPR013170
iPTMnet:B3H6J5KEGG:ath:AT3G49601KO:K13172ncoils:Coil
OMA:HENDKHNPaxDb:B3H6J5Pfam:PF08312PRIDE:B3H6J5
ProteinModelPortal:B3H6J5Proteomes:UP000006548RefSeq:NP_001118799.1SMART:SM01115
SMR:B3H6J5STRING:3702.AT3G49601.1TAIR:AT3G49601UniGene:At.47890
UniProt:B3H6J5
Coordinates (TAIR10) chr3:-:18387504..18389279
Molecular Weight (calculated) 68356.40 Da
IEP (calculated) 9.55
GRAVY (calculated) -1.91
Length 591 amino acids
Sequence (TAIR10)
(BLAST)
001: MYNGIGLQTA RGSGTNGYVQ TNKFFVRPRN GGKPVKGGKG FEDDEGTAGL SKKPNKAILE HDRKRQIHLK LAILEDKLAD QGYSDIEIAQ KLEEARVSLE
101: AAAAANEEES DSKVSNTQTH QVAARKEKQM EAFRAALGLP DQQQVAEEGI IDDEPMREGF EGRLKERREH SFLDRDSGRK KVDEDVDEKD AKVKESKKQR
201: GGDDDDVDVV KRHKKKESKK RRHDDSSESD EHGRDRRRRS KKKAKGRKQE SESDSSSSDS ESDSDSDDGK KRGRKKPTKT TKKRSRRKRS VSSESEEVES
301: DDSKKLRKSH KKSLPSNRSG SKELRDKHDE QSRAGRKRHD SDVSEPESED NKQPLRKKEE AYRGGQKQKR DDEDVEADHL KDRYTRDDKK AARDSDDSEI
401: EYQNKKQLRS KVEVYSAGMS QKRKEEEDVT KHGKDKYRSD SRGKEVARDS DDSEAEYENR KKLKNESYQR GRKHKREEDE DNDNHGRDRY RGDDAVKRYG
501: TIKEDDDRYR GRAIEEEGDD DRGRYRPRRE SVKDDEEEYK HGRDRYRGDG RRATGKEDDD DDRVSREREY SSRGRSRYDD SRSSGKRSSH G
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)