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AT4G21660.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : proline-rich spliceosome-associated (PSP) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
proline-rich spliceosome-associated (PSP) family protein; INVOLVED IN: mRNA processing; LOCATED IN: nucleus, chloroplast; CONTAINS InterPro DOMAIN/s: PSP, proline-rich (InterPro:IPR006568), Protein of unknown function DUF382 (InterPro:IPR007180); BEST Arabidopsis thaliana protein match is: pliceosome associated protein-related (TAIR:AT1G11520.1); Has 10486 Blast hits to 6076 proteins in 488 species: Archae - 22; Bacteria - 303; Metazoa - 4991; Fungi - 920; Plants - 455; Viruses - 239; Other Eukaryotes - 3556 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5182eggNOG:KOG2330EMBL:BT002013EMBL:BT010557
EMBL:CP002687EnsemblPlants:AT4G21660EnsemblPlants:AT4G21660.1entrez:828253
ExpressionAtlas:Q8H0V8GeneID:828253GO:GO:0005634Gramene:AT4G21660.1
hmmpanther:PTHR12785hmmpanther:PTHR12785:SF8HOGENOM:HOG000159304InterPro:IPR006568
InterPro:IPR007180ncoils:CoilPfam:PF04037Pfam:PF04046
PhylomeDB:Q8H0V8Proteomes:UP000006548Reactome:R-ATH-72163Reactome:R-ATH-72165
RefSeq:NP_193897.2SMART:SM00581STRING:3702.AT4G21660.2TAIR:AT4G21660
UniGene:At.22888UniProt:Q8H0V8
Coordinates (TAIR10) chr4:-:11506259..11509772
Molecular Weight (calculated) 66836.90 Da
IEP (calculated) 4.85
GRAVY (calculated) -1.13
Length 584 amino acids
Sequence (TAIR10)
(BLAST)
001: MTADSTVALV HSVVSNGDVS NGNTSASSKK SREIDRRRRR RKQKKNNKAS QADVDASDVS AASESKENTD PQPQVCEQIV IEYVPEQAEF EDGFNDEFKE
101: IFEKFNFREP LASEEDGTKD ESEEKEDVKK KVNSDSDSDD DEQDNQNKEK GISNKKKKLQ RRMKIAELKQ VSARPDVVEV WDATSADPKL LVFLKSYRNT
201: VPVPRHWSQK RKYLQGKRGI EKQPFHLPDF IAATGIEKIR QAYIEKEDGK KLKQKQRERM QPKMGKMDID YQVLHDAFFK YQTKPKLSAL GDLYFEGKEF
301: EVKLRETKPG FLSNDLKEAL GMPEGAPPPW LINMQRYGPP PSYPHLKIPG LNAPIPIGAS FGFHAGGWGK PPVDEYGRPL YGDVFGVQQQ DQPNYEEEPI
401: DKSKHWGDLE EEEEEEEEEE EEQEEEMDEE ELEDGTESVD TLSSTPTGIE TPDAIELRKD QRKEPDRALY QVLEEKGESV APGTLLGTSH TYVIKTGTQE
501: KTGAKRVDLL RGQKTDRVDV SLQPEELDAM ENVLPAKYEE AREEEKLRNK PVDLSDMVVE HVQQNSRKRK MHDKEGKKKK DFKF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)