AT1G80930.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : MIF4G domain-containing protein / MA3 domain-containing protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
MIF4G domain-containing protein / MA3 domain-containing protein; FUNCTIONS IN: RNA binding, binding; INVOLVED IN: translation, RNA metabolic process; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Initiation factor eIF-4 gamma, MA3 (InterPro:IPR003891), Armadillo-type fold (InterPro:IPR016024), MIF4G-like, type 3 (InterPro:IPR003890), MIF4-like, type 1/2/3 (InterPro:IPR016021); BEST Arabidopsis thaliana protein match is: Initiation factor eIF-4 gamma, MA3 (TAIR:AT1G52325.1); Has 51676 Blast hits to 28577 proteins in 1484 species: Archae - 86; Bacteria - 5039; Metazoa - 22313; Fungi - 6500; Plants - 3817; Viruses - 357; Other Eukaryotes - 13564 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:30405774..30409499 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 104022.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.84 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.11 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 900 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGRHGSSSDE EERVRRRDRR RRERSPDVRR SRTETDDVAR RVRVSDDEDR KSSRRDLEIG GTVADGEGRR GDKVRRKETS DDEELARRSR KDRKEANSGS 101: EDDRGKRIEV DSDGDGERRV NKGRNTDRVR ADTSSDEEDD LKGNKKEPME VDDDYGRRGR RRSPKVMEKQ GRERSHRGSR VIADKPSDEE DDRQRSRGGR 201: RESQRKRRDH RASDDDEEGE IRSERRGKEK NDRGSEGLLK RDRRERDLTD GHENGSRRRE SERKDRSRRD DGVRDEKERR HNDKYDDSQR DKLRKEDSRK 301: REEKKIEVPK PKLAELNPSE NNAMALGKTG GVYIPPFKLA RMMKEVEDKS SVEYQRLTWD ALRKSINGLV NKVNASNIKN IIPELFAENL IRGRGLFCRS 401: CMKSQMASPG FTDVFAALVA VINAKFPEVA ELLLKRVVLQ LKRAYKRNDK PQLLAAVKFI AHLVNQQVAE EIIALELVTI LLGDPTDDSV EVAVGFVTEC 501: GAMLQDVSPR GLNGIFERFR GILHEGEIDK RVQYLIESLF ATRKAKFQGH PAVRPELDLV EEKYSHDLSL DHEIDPETAL DIFKPDPDFV ENEKKYEALK 601: KELLGDEESE DEDGSDASSE DNDEEEDESD EEDEEQMRIR DETETNLVNL RRTIYLTIMS SVDFEEAGHK LLKIKLEPGQ EMELCIMLLE CCSQERTYLR 701: YYGLLGQRFC MINKIHQENF EKCFVQQYSM IHRLETNKLR NVAKFFAHLL GTDALPWHVL AYIRLTEEDT TSSSRIFIKI LFQELSEHLG IRLLNERLQD 801: PTMQESLESI FPKDNPKNTR FAINFFTSIG LGGITENLRE YLKNMPSLIM QRQKQVAESE SGSSSGSDSS DSESESESGS SSSSSSDESD REKRKRRRRS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)