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AT1G20920.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G09620.1); Has 370658 Blast hits to 166919 proteins in 4473 species: Archae - 2452; Bacteria - 63379; Metazoa - 145404; Fungi - 45975; Plants - 23206; Viruses - 1711; Other Eukaryotes - 88531 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1266-MONOMERBioCyc:ARA:GQT-1598-MONOMERBioGrid:23924EC:3.6.4.13
eggNOG:ENOG410XSQVeggNOG:KOG0339EMBL:AC007369EMBL:BT002030
EMBL:CP002684EnsemblPlants:AT1G20920EnsemblPlants:AT1G20920.1EnsemblPlants:AT1G20920.2
entrez:838685ExpressionAtlas:Q8H0U8Gene3D:3.40.50.300GeneID:838685
Genevisible:Q8H0U8GO:GO:0000398GO:GO:0003723GO:GO:0004004
GO:GO:0005524GO:GO:0005634GO:GO:0010468GO:GO:0010501
hmmpanther:PTHR24031hmmpanther:PTHR24031:SF25HOGENOM:HOG000007229InParanoid:Q8H0U8
InterPro:IPR000629InterPro:IPR001650InterPro:IPR011545InterPro:IPR014001
InterPro:IPR014014InterPro:IPR027417iPTMnet:Q8H0U8KEGG:ath:AT1G20920
KO:K12811MINT:MINT-8067688ncoils:CoilOMA:IYLAIEX
PaxDb:Q8H0U8Pfam:PF00270Pfam:PF00271Pfam:Q8H0U8
Pfscan:PS51192Pfscan:PS51194Pfscan:PS51195PhylomeDB:Q8H0U8
PIR:H86341PRIDE:Q8H0U8PRO:PR:Q8H0U8PROSITE:PS00039
PROSITE:PS51192PROSITE:PS51194PROSITE:PS51195ProteinModelPortal:Q8H0U8
Proteomes:UP000006548RefSeq:NP_001077571.1RefSeq:NP_173516.1scanprosite:PS00039
SMART:SM00487SMART:SM00490STRING:3702.AT1G20920.1SUPFAM:SSF52540
TAIR:AT1G20920UniGene:At.41680UniGene:At.48212UniProt:Q8H0U8
Coordinates (TAIR10) chr1:+:7285342..7288842
Molecular Weight (calculated) 133041.00 Da
IEP (calculated) 5.59
GRAVY (calculated) -1.14
Length 1166 amino acids
Sequence (TAIR10)
(BLAST)
0001: MEVEKSKYRS EDLDVVEEEA DLKKSRRDRD RSNERKKDKG SEKRREKDRR KKRVKSSDSE DDYDRDDDEE REKRKEKERE RRRRDKDRVK RRSERRKSSD
0101: SEDDVEEEDE RDKRRVNEKE RGHREHERDR GKDRKRDRER EERKDKERER EKDRERRERE REEREKERVK ERERREREDG ERDRREREKE RGSRRNRERE
0201: RSREVGNEES DDDVKRDLKR RRKEGGERKE KEREKSVGRS SRHEDSPKRK SVEDNGEKKE KKTREEELED EQKKLDEEVE KRRRRVQEWQ ELKRKKEEAE
0301: SESKGDADGN EPKAGKAWTL EGESDDEEGH PEEKSETEMD VDEETKPEND GDAKMVDLEN ETAATVSESG GDGAVDEEEI DPLDAFMNTM VLPEVEKFCN
0401: GAPPPAVNDG TLDSKMNGKE SGDRPKKGFN KALGRIIQGE DSDSDYSEPK NDDDPSLDED DEEFMKRVKK TKAEKLSLVD HSKIEYEPFR KNFYIEVKDI
0501: SRMTQEEVNT YRKELELKVH GKDVPRPIKF WHQTGLTSKI LDTMKKLNYE KPMPIQTQAL PIIMSGRDCI GVAKTGSGKT LGFVLPMLRH IKDQPPVEAG
0601: DGPIGLVMAP TRELVQQIHS DIRKFSKPLG IRCVPVYGGS GVAQQISELK RGTEIVVCTP GRMIDILCTS SGKITNLRRV TFLVMDEADR MFDMGFEPQI
0701: TRIIQNIRPE RQTVLFSATF PRQVETLARK VLNKPVEIQV GGRSVVNKDI TQLVEVRPES DRFLRLLELL GEWSEKGKIL VFVQSQEKCD ALYRDMIKSS
0801: YPCLSLHGGK DQTDRESTIS DFKNDVCNLL IATSVAARGL DVKELELVVN FDAPNHYEDY VHRVGRTGRA GRKGCAVTFI SEDDAKYAPD LVKALELSEQ
0901: PVPDDLKALA DGFMVKVKQG IEQAHGTGYG GSGFKFNEEE EEVRKAAKKA QAKEYGFEED KSDSEDENDV VRKAGGGEIS QQQATFAQIA AIAAAAKAAA
1001: AAPVSAPVTA NQLLANGGGL AAMPGVLPVT VPTLPSEGAG RAAAMVAAMN LQHNLAKIQA DAMPEHYEAE LEINDFPQNA RWKVTHKETL GPISEWTGAA
1101: ITTRGQFYPT GRIPGPGERK LYLFIEGPSE KSVKHAKAEL KRVLEDITNQ AMSSLPGGAS GRYSVL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)