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AT3G56860.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : UBP1-associated protein 2A
Curator
Summary (TAIR10)
encodes a nuclear protein that binds to RNA with a specificity for oligouridylates in vitro. Along with UBP1 and UBA1a, it may act as a component of a complex recognizing U-rich sequences in plant 3'-UTRs and contributing to the stabilization of mRNAs in the nucleus.
Computational
Description (TAIR10)
UBP1-associated protein 2A (UBA2A); FUNCTIONS IN: RNA binding, AU-rich element binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT2G41060.2); Has 31187 Blast hits to 20847 proteins in 859 species: Archae - 47; Bacteria - 1373; Metazoa - 14793; Fungi - 3614; Plants - 4555; Viruses - 445; Other Eukaryotes - 6360 (source: NCBI BLink).
Protein Annotations
BioGrid:10169eggNOG:COG0724eggNOG:KOG0118EMBL:AF367280
EMBL:AJ439404EMBL:AK318719EMBL:AL390921EMBL:AY037245
EMBL:AY042885EMBL:AY081527EMBL:AY091040EMBL:AY117351
EMBL:AY133549EMBL:BT006368EMBL:CP002686EnsemblPlants:AT3G56860
EnsemblPlants:AT3G56860.1EnsemblPlants:AT3G56860.2EnsemblPlants:AT3G56860.3EnsemblPlants:AT3G56860.4
EnsemblPlants:AT3G56860.5entrez:824853Gene3D:3.30.70.330GeneID:824853
Genevisible:Q9LES2GO:GO:0000166GO:GO:0005634GO:GO:0005829
GO:GO:0006952GO:GO:0008219GO:GO:0009693GO:GO:0009738
GO:GO:0010150GO:GO:0017091GO:GO:0048255Gramene:AT3G56860.1
Gramene:AT3G56860.2Gramene:AT3G56860.3Gramene:AT3G56860.4Gramene:AT3G56860.5
hmmpanther:PTHR24012hmmpanther:PTHR24012:SF490HOGENOM:HOG000070822InParanoid:Q9LES2
IntAct:Q9LES2InterPro:IPR000504InterPro:IPR012677iPTMnet:Q9LES2
KEGG:ath:AT3G56860KO:K12741ncoils:CoilOMA:GHLMAGN
PaxDb:Q9LES2Pfam:PF00076Pfam:Q9LES2Pfscan:PS50102
PhylomeDB:Q9LES2PIR:T51274PRIDE:Q9LES2PRO:PR:Q9LES2
PROSITE:PS50102ProteinModelPortal:Q9LES2Proteomes:UP000006548RefSeq:NP_001190109.1
RefSeq:NP_001190110.1RefSeq:NP_567042.1RefSeq:NP_850710.1RefSeq:NP_850711.1
SMART:SM00360SMR:Q9LES2STRING:3702.AT3G56860.1SUPFAM:SSF54928
TAIR:AT3G56860tair10-symbols:UBA2AUniGene:At.9845UniProt:Q9LES2
Coordinates (TAIR10) chr3:-:21050708..21052144
Molecular Weight (calculated) 51441.60 Da
IEP (calculated) 4.81
GRAVY (calculated) -0.82
Length 478 amino acids
Sequence (TAIR10)
(BLAST)
001: MTKKRKLEGE ESNEAEEPSQ KLKQTPEEEQ QLVIKNQDNQ GDVEEVEYEE VEEEQEEEVE DDDDEDDGDE NEDQTDGNRI EAAATSGSGN QEDDDDEPIQ
101: DLLEPFSKEQ VLSLLKEAAE KHVDVANRIR EVADEDPVHR KIFVHGLGWD TKTETLIEAF KQYGEIEDCK AVFDKISGKS KGYGFILYKS RSGARNALKQ
201: PQKKIGSRMT ACQLASKGPV FGGAPIAAAA VSAPAQHSNS EHTQKKIYVS NVGAELDPQK LLMFFSKFGE IEEGPLGLDK YTGRPKGFCL FVYKSSESAK
301: RALEEPHKTF EGHILHCQKA IDGPKPGKQQ QHHHNPHAYN NPRYQRNDNN GYGPPGGHGH LMAGNPAGMG GPTAQVINPA IGQALTALLA SQGAGLAFNP
401: AIGQALLGSL GTAAGVNPGN GVGMPTGYGT QAMAPGTMPG YGTQPGLQGG YQTPQPGQGG TSRGQHGVGP YGTPYMGH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)