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AT3G04620.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.360
mitochondrion 0.333
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Alba DNA/RNA-binding protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Alba DNA/RNA-binding protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Alba, DNA/RNA-binding protein (InterPro:IPR002775), Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related (InterPro:IPR014560); BEST Arabidopsis thaliana protein match is: Alba DNA/RNA-binding protein (TAIR:AT1G29250.1); Has 160 Blast hits to 160 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 134; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IZX4eggNOG:ENOG4111815EMBL:AC011437EMBL:BT010655
EMBL:BT010971EMBL:CP002686EnsemblPlants:AT3G04620EnsemblPlants:AT3G04620.1
entrez:819620Gene3D:3.30.110.20GeneID:819620GO:GO:0003676
GO:GO:0048235Gramene:AT3G04620.1hmmpanther:PTHR31947hmmpanther:PTHR31947:SF5
HOGENOM:HOG000237559IntAct:Q9SR12InterPro:IPR002775InterPro:IPR014560
KEGG:ath:AT3G04620OMA:ATVETHKPfam:PF01918PhylomeDB:Q9SR12
PIRSF:PIRSF030333Proteomes:UP000006548RefSeq:NP_187113.1SMR:Q9SR12
STRING:3702.AT3G04620.1SUPFAM:SSF82704TAIR:AT3G04620UniGene:At.40804
UniProt:Q9SR12
Coordinates (TAIR10) chr3:-:1255660..1256739
Molecular Weight (calculated) 17667.20 Da
IEP (calculated) 5.84
GRAVY (calculated) -0.24
Length 164 amino acids
Sequence (TAIR10)
(BLAST)
001: MAMEVATPAP APIPSERNIV LAPATTTTTA TVETHKKNRI QVSNTKKPLF FYVNLAKRYI QQHNEVELSA LGMAITTVVT ISEILKNNGL ATEKKVLTST
101: VGMKDETKGK MVQKAKIEIV LGKSDKFDSL VPPVTNGKTP EEEASAETEA SVEAQEEVAA ATEV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)