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AT4G29170.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Mnd1 family protein
Curator
Summary (TAIR10)
A homolog of yeast, mouse and human mnd1delta protein. Null mutants exhibit normal vegetative and flower development; however, during prophase I, chromosomes become fragmented resulting in random distribution of the fragments between polyads. Both male and female meiosis are defective and strong accumulation of AtRAD51 was observed in the inflorescence nuclei of mutant plants. Similarly to its yeast and animal homologues, AtMnd1 might play a role in DSB repair during meiosis.
Computational
Description (TAIR10)
ATMND1; CONTAINS InterPro DOMAIN/s: Meiotic nuclear division protein 1 (InterPro:IPR005647); Has 334 Blast hits to 334 proteins in 171 species: Archae - 0; Bacteria - 2; Metazoa - 89; Fungi - 130; Plants - 42; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).
Protein Annotations
BioGrid:14325eggNOG:COG5124eggNOG:KOG3433EMBL:AK117713
EMBL:AL078470EMBL:AL161574EMBL:AM162278EMBL:BT005435
EMBL:CP002687EMBL:DQ248000EnsemblPlants:AT4G29170EnsemblPlants:AT4G29170.1
entrez:829038GeneID:829038Genevisible:Q8GYD2GO:GO:0005730
GO:GO:0006302GO:GO:0006310GO:GO:0009553GO:GO:0009555
GO:GO:0010212GO:GO:0051321hmmpanther:PTHR31398hmmpanther:PTHR31398:SF0
HOGENOM:HOG000006783InParanoid:Q8GYD2IntAct:Q8GYD2InterPro:IPR005647
iPTMnet:Q8GYD2KEGG:ath:AT4G29170ncoils:CoilOMA:GISIYFW
PaxDb:Q8GYD2Pfam:PF03962Pfam:Q8GYD2PhylomeDB:Q8GYD2
PIR:T08972PIRSF:PIRSF026991PRIDE:Q8GYD2PRO:PR:Q8GYD2
ProteinModelPortal:Q8GYD2Proteomes:UP000006548RefSeq:NP_001078469.1RefSeq:NP_194646.2
SMR:Q8GYD2STRING:3702.AT4G29170.1TAIR:AT4G29170tair10-symbols:ATMND1
UniGene:At.31952UniProt:Q8GYD2
Coordinates (TAIR10) chr4:+:14382985..14385128
Molecular Weight (calculated) 26404.10 Da
IEP (calculated) 4.89
GRAVY (calculated) -0.73
Length 230 amino acids
Sequence (TAIR10)
(BLAST)
001: MSKKRGLSLE EKREKMLQIF YESQDFFLLK ELEKMGPKKG VISQSVKDVI QSLVDDDLVA KDKIGISIYF WSLPSCAGNQ LRSVRQKLES DLQGSNKRLA
101: ELVDQCEALK KGREESEERT EALTQLKDIE KKHKDLKNEM VQFADNDPAT LEAKRNAIEV AHQSANRWTD NIFTLRQWCS NNFPQAKEQL EHLYTEAGIT
201: EDFDYIELSS FPLSSSHEAD TAKQLVQDEA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)