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AT3G22880.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : DNA repair (Rad51) family protein
Curator
Summary (TAIR10)
Expression of the AtDMC1 is restricted to pollen mother cells in anthers and to megaspore mother cells in ovules. Similar to meiosis-specific yeast DMC gene.
Computational
Description (TAIR10)
DISRUPTION OF MEIOTIC CONTROL 1 (DMC1); FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA repair, meiosis, chiasma assembly, reciprocal meiotic recombination, DNA metabolic process; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: DNA recombination/repair protein RecA/RadB, ATP-binding domain (InterPro:IPR020588), DNA repair Rad51/transcription factor NusA, alpha-helical (InterPro:IPR010995), ATPase, AAA+ type, core (InterPro:IPR003593), Meiotic recombinase Dmc1 (InterPro:IPR011940), DNA recombination and repair protein, RecA-like (InterPro:IPR016467), DNA recombination/repair protein RecA, monomer-monomer interface (InterPro:IPR020587), DNA recombination and repair protein Rad51, C-terminal (InterPro:IPR013632); BEST Arabidopsis thaliana protein match is: RAS associated with diabetes protein 51 (TAIR:AT5G20850.1); Has 11998 Blast hits to 11924 proteins in 3797 species: Archae - 689; Bacteria - 8026; Metazoa - 742; Fungi - 447; Plants - 503; Viruses - 22; Other Eukaryotes - 1569 (source: NCBI BLink).
Protein Annotations
BioGrid:7192eggNOG:COG0468eggNOG:KOG1434EMBL:AP001300
EMBL:BT023447EMBL:CP002686EMBL:D45415EMBL:U76670
EnsemblPlants:AT3G22880EnsemblPlants:AT3G22880.1entrez:821860Gene3D:3.40.50.300
GeneID:821860Genevisible:Q39009GO:GO:0003677GO:GO:0005524
GO:GO:0005634GO:GO:0006259GO:GO:0006281GO:GO:0007126
GO:GO:0008094GO:GO:0051026Gramene:AT3G22880.1hmmpanther:PTHR22942
hmmpanther:PTHR22942:SF30HOGENOM:HOG000227426IntAct:Q39009InterPro:IPR003593
InterPro:IPR010995InterPro:IPR011940InterPro:IPR013632InterPro:IPR016467
InterPro:IPR020587InterPro:IPR020588InterPro:IPR027417KEGG:ath:AT3G22880
KO:K10872MINT:MINT-5222993ncoils:CoilOMA:RAYNSDM
PaxDb:Q39009Pfam:PF08423Pfam:Q39009Pfscan:PS50162
Pfscan:PS50163PhylomeDB:Q39009PIR:JC4092PIRSF:PIRSF005856
PRIDE:Q39009PRO:PR:Q39009PROSITE:PS50162PROSITE:PS50163
ProteinModelPortal:Q39009Proteomes:UP000006548RefSeq:NP_188928.2SMART:SM00382
SMR:Q39009STRING:3702.AT3G22880.1SUPFAM:SSF47794SUPFAM:SSF52540
TAIR:AT3G22880tair10-symbols:ARLIM15tair10-symbols:ATDMC1tair10-symbols:DMC1
TIGRfam:TIGR02238TIGRFAMs:TIGR02238UniGene:At.50216UniProt:Q39009
Coordinates (TAIR10) chr3:-:8097948..8100740
Molecular Weight (calculated) 37515.40 Da
IEP (calculated) 5.49
GRAVY (calculated) -0.15
Length 344 amino acids
Sequence (TAIR10)
(BLAST)
001: MMASLKAEET SQMQLVEREE NDEDEDLFEM IDKLIAQGIN AGDVKKLQEA GIHTCNGLMM HTKKNLTGIK GLSEAKVDKI CEAAEKIVNF GYMTGSDALI
101: KRKSVVKITT GCQALDDLLG GGIETSAITE AFGEFRSGKT QLAHTLCVTT QLPTNMKGGN GKVAYIDTEG TFRPDRIVPI AERFGMDPGA VLDNIIYARA
201: YTYEHQYNLL LGLAAKMSEE PFRILIVDSI IALFRVDFTG RGELADRQQK LAQMLSRLIK IAEEFNVAVY MTNQVIADPG GGMFISDPKK PAGGHVLAHA
301: ATIRLLFRKG KGDTRVCKVY DAPNLAEAEA SFQITQGGIA DAKD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)