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AT3G19590.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

Arabidopsis cell culture (plastidal marker)

At3g19590-GFP
(full-length)
plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
Encodes a protein that may have a role in the spindle assembly checkpoint.
Computational
Description (TAIR10)
BUB (BUDDING UNINHIBITED BY BENZYMIDAZOL) 3.1 (BUB3.1); CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781), G-protein beta WD-40 repeat, region (InterPro:IPR020472); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G49910.1); Has 7284 Blast hits to 5351 proteins in 449 species: Archae - 14; Bacteria - 1710; Metazoa - 2206; Fungi - 1743; Plants - 568; Viruses - 0; Other Eukaryotes - 1043 (source: NCBI BLink).
Protein Annotations
BioGrid:6829eggNOG:ENOG410XRBGeggNOG:KOG1036EMBL:AP000417
EMBL:AY087404EMBL:BT004273EMBL:BT006152EMBL:CP002686
EnsemblPlants:AT3G19590EnsemblPlants:AT3G19590.1entrez:821496Gene3D:2.130.10.10
GeneID:821496Genevisible:Q9LJN8GO:GO:0000776GO:GO:0000777
GO:GO:0005634GO:GO:0005828GO:GO:0005876GO:GO:0007059
GO:GO:0007067GO:GO:0007094GO:GO:0009524GO:GO:0051301
GO:GO:0051321GO:GO:0080008Gramene:AT3G19590.1hmmpanther:PTHR10971
HOGENOM:HOG000208822InParanoid:Q9LJN8IntAct:Q9LJN8InterPro:IPR001680
InterPro:IPR015943InterPro:IPR017986InterPro:IPR020472iPTMnet:Q9LJN8
KEGG:ath:AT3G19590KO:K02180OMA:EGEKSHEPaxDb:Q9LJN8
Pfam:PF00400Pfam:Q9LJN8Pfscan:PS50082Pfscan:PS50294
PhylomeDB:Q9LJN8PIR:T52386PRIDE:Q9LJN8PRINTS:PR00320
PRO:PR:Q9LJN8PROSITE:PS50082PROSITE:PS50294ProteinModelPortal:Q9LJN8
Proteomes:UP000006548Reactome:R-ATH-141430Reactome:R-ATH-174184Reactome:R-ATH-179409
RefSeq:NP_566644.1SMART:SM00320SMR:Q9LJN8STRING:3702.AT3G19590.1
SUPFAM:SSF50978TAIR:AT3G19590tair10-symbols:BUB3.1UniGene:At.8134
UniProt:Q9LJN8
Coordinates (TAIR10) chr3:+:6805798..6808374
Molecular Weight (calculated) 37875.50 Da
IEP (calculated) 8.52
GRAVY (calculated) -0.45
Length 340 amino acids
Sequence (TAIR10)
(BLAST)
001: MTTVTPSAGR ELSNPPSDGI SNLRFSNNSD HLLVSSWDKR VRLYDVSTNS LKGEFLHGGA VLDCCFHDDF SGFSVGADYK VRRIVFNVGK EDILGTHDKA
101: VRCVEYSYAA GQVITGSWDK TVKCWDPRGA SGPERTQVGT YLQPERVYSM SLVGHRLVVA TAGRHVNIYD LRNMSQPEQR RESSLKYQTR CVRCYPNGTG
201: YALSSVEGRV AMEFFDLSEA AQAKKYAFKC HRKSEAGRDI VYPVNSIAFH PIYGTFATGG CDGFVNIWDG NNKKRLYQYS KYPTSISALS FSRDGQLLAV
301: ASSYTFEEGE KSQEPEAIFV RSVNEIEVKP KPKVYPNPAA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)