AT5G05510.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Mad3/BUB1 homology region 1 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Mad3/BUB1 homology region 1; CONTAINS InterPro DOMAIN/s: Mitotic checkpoint serine/threonine protein kinase, Bub1 (InterPro:IPR015661), Mad3/BUB1 homology region 1 (InterPro:IPR013212); BEST Arabidopsis thaliana protein match is: BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (TAIR:AT2G33560.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:1630651..1632568 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 54230.80 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.46 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.92 | ||||||||||||||||||||||||||||||||||||
| Length | 471 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAKNENGYEN LLASLIVDIK SYSGKDHLLP WIRGVKKMKE SLPSQILNEK LPRFLQKCAE SFESDKRYKN DSRYIRVWLQ LMDFVDDPRA LLRTMEAKSI 101: GTKRSLFYQA YALHYEKMKR FEDAEKMYRL GVQNLAEPMD ELQKSYLQFV TRMERHKKKK TQRQEQKLSG KHHKVDERQQ HEPVLNFVDK AIVGKPEAEN 201: ACHHGLVDPT INMKEAMNTI NNMFKEPIET APLQRRSRQR SQNKENQGCN NSFEVFLDEN LECETGTSGK AKTSTTQCGS QPNQESFEIF IDDENTDETA 301: DENDEAGKAF VFLLPRDHSP ESSEEADRNT PPRARFREDT VVRRFVGSTI SDEPEAVENA CHHGLVDPTV NLKEAMEDIN NMFGEPINFV RPNRSKNKGK 401: AVVETKPNPA AGFSILEDDD EEEAEQEHQG KSQPTQRLPS KSDERELFEP TVCTKVALDE INKLFAMPMD F |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)