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AT5G60150.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J2KWeggNOG:ENOG410YSVGEMBL:CP002688EnsemblPlants:AT5G60150
EnsemblPlants:AT5G60150.1entrez:836137GeneID:836137Gramene:AT5G60150.1
hmmpanther:PTHR33737hmmpanther:PTHR33737:SF2InParanoid:F4JXH5iPTMnet:F4JXH5
KEGG:ath:AT5G60150ncoils:CoilOMA:SVERQQMPaxDb:F4JXH5
PRIDE:F4JXH5ProteinModelPortal:F4JXH5Proteomes:UP000006548RefSeq:NP_200823.1
STRING:3702.AT5G60150.1TAIR:AT5G60150UniGene:At.50718UniProt:F4JXH5
Coordinates (TAIR10) chr5:+:24218211..24223245
Molecular Weight (calculated) 130203.00 Da
IEP (calculated) 4.45
GRAVY (calculated) -0.64
Length 1195 amino acids
Sequence (TAIR10)
(BLAST)
0001: MDKDLLDISG EDDEDNWLLK NTPKKTNSSR GKSYLKCSPL QIPRSSRIVP TRPPFSPIGR VTGTSNNREQ PCASVDTDSV GKENAKVELP KLSVERQQMK
0101: KKKKNAGFNL RKSLAWDRAF STEEGVLDSS ELSKITGTAC HLGGDRLAAI QEEYRESMSA SKCNVSPGLQ ALEENLFNDL PVNSKNREKK LVSGIMPKEL
0201: SISKVPTTKS DPVTVGNNMK RTTQSPIKAK NSQPTQLKNS QRSLGSESFS KNTSSTKSKT KSSLASKSSI PKPSLKQARR NVISKSSEIP TVSYSQHSVV
0301: AKSNVGPMTA SDVAMLGHAS VIPDSNVITL GTSLAQSSCN KAGSTQSAVS RLGKPSGLRA PKPSIGYFSQ SDSQPSQSAG DKHSQLPRSD VCSAAHFSLI
0401: PTFKKPQVAE KFPGVNCKAA TGIFGSSDSA ARFSAQSICL KPSQEKLKVD LNSTQEVESK VLRCPLSFQI NENPQHQCVI QGDTGNLVLD DVTYCTSEKI
0501: STEQCQEFQG NSALPPSGCK NNVQDGSNMS DDNRDEKRKS CLSVEEYCAL PMKDSMDSTM QGPPCDELTL FDNYSQLKVS NPGEEDMCTT NDFSGDSDTL
0601: DVPGQPLNEC LHPGNEDEIS PCLSEEKDAL VVYHSTEYVA KQPEVLDSFT AKSSFFGDLA SIKGDADNPS SSENQLGNTE FVSVPLEPSE ALDCVQSLCN
0701: HLEVNAVANS VLCDHNMVCD GQSVLETEKR IEISESTEKN YETDFIGPFS ECKYWFRESE EQHLSNQLVL EVKEGGHEID VLIRNEEADG PDMQIECFTG
0801: SSDADNMEQV KLLRPSSVEV TMEIKPLESS HEPFSEKSTS EKQKQYNCSS SENTSDVNDG CVMKQADQLG TLVGCSPEKD ASVAVFSYSN EELGDNSELE
0901: DMDLVTDSDC SDEEPEDKLE RTEVDVVTDP ELISGLDEFS VKGVRNQEYP EVEDIQTASD LCGKTKTLLS ESVSSSDSIF GVPECLNEGT NFSRISEGMS
1001: KEDSNSGRIE HNYVVKAEFQ VDAEKDFSAQ VTGQELVPNE GDEVKVVKIS PDPVSFAPRE EELGTPIPMK ETISGRDDMQ INEFNVLSDD ILTSESNASE
1101: GNDKMILLDA KLEKKPDPII VKPPNAVPFS DEWLAAIEAA GEEILTLKSG RVQHSPTEKS APEPGPWSPV KKSNQVVGPF DCTKYNNKGL PPAFD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)