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AT1G44110.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Cyclin A1;1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cyclin A1;1 (CYCA1;1); CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin (InterPro:IPR006670), G2/mitotic-specific cyclin A (InterPro:IPR015453), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin, A/B/D/E (InterPro:IPR014400); BEST Arabidopsis thaliana protein match is: CYCLIN A1;2 (TAIR:AT1G77390.1); Has 4548 Blast hits to 4417 proteins in 376 species: Archae - 0; Bacteria - 4; Metazoa - 1999; Fungi - 561; Plants - 1168; Viruses - 34; Other Eukaryotes - 782 (source: NCBI BLink).
Protein Annotations
BioGrid:26239eggNOG:COG5024eggNOG:KOG0654EMBL:AC074228
EMBL:AK175406EMBL:CP002684EnsemblPlants:AT1G44110EnsemblPlants:AT1G44110.1
entrez:841014Gene3D:1.10.472.10GeneID:841014Genevisible:Q9C6Y3
GO:GO:0005634GO:GO:0005737GO:GO:0007049GO:GO:0051301
Gramene:AT1G44110.1hmmpanther:PTHR10177hmmpanther:PTHR10177:SF203HOGENOM:HOG000167672
InParanoid:Q9C6Y3IntAct:Q9C6Y3InterPro:IPR004367InterPro:IPR006671
InterPro:IPR013763KEGG:ath:AT1G44110KO:K06627OMA:CATMACD
PaxDb:Q9C6Y3Pfam:PF00134Pfam:PF02984Pfam:Q9C6Y3
PhylomeDB:Q9C6Y3PIR:D96505PRIDE:Q9C6Y3PRO:PR:Q9C6Y3
PROSITE:PS00292ProteinModelPortal:Q9C6Y3Proteomes:UP000006548Reactome:R-ATH-113510
Reactome:R-ATH-1538133Reactome:R-ATH-174184Reactome:R-ATH-68911Reactome:R-ATH-68949
Reactome:R-ATH-69205Reactome:R-ATH-69273Reactome:R-ATH-69656RefSeq:NP_175077.1
scanprosite:PS00292SMART:SM00385SMART:SM01332SMR:Q9C6Y3
STRING:3702.AT1G44110.1SUPFAM:SSF47954TAIR:AT1G44110tair10-symbols:CYCA1;1
UniGene:At.38852UniProt:Q9C6Y3
Coordinates (TAIR10) chr1:-:16775035..16777182
Molecular Weight (calculated) 51907.00 Da
IEP (calculated) 8.23
GRAVY (calculated) -0.38
Length 460 amino acids
Sequence (TAIR10)
(BLAST)
001: MSNILQNRRS SFSSSTKSSL AKRQAPSSSE NSVKLMPAMT KKRAPLSNIT NQKIASRLQN SDSVHCSNKS AKLKIAPSVC VNASFSSNLQ QSIVPHKVAS
101: SPSKSDDGSV SMDETRSSSD SYKSPQVEYI ENDDVSAVVS IERKALSNLF ITPNSETIDN YCSRDVLSDM KKMDKNQIVN IDSNNGDPQL CATFACDIYK
201: HLRASEAKKR PDVDYMERVQ KDVNSSMRGI LVDWLIEVSE EYRLVPETLY LTVNYIDRYL SGNVISRQKL QLLGVACMMI AAKYEEICAP QVEEFCYITD
301: NTYLKDEVLD MESDVLNYLK FEMTAPTTKC FLRRFVRAAH GVHEAPLMQL ECMANYIAEL SLLEYTMLSH SPSLVAASAI FLAKYILDPT RRPWNSTLQH
401: YTQYKAMELR GCVKDLQRLC STAHGSTLPA VREKYSQHKY KFVAKKFCPS VIPQEFFNNS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)