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AT1G02730.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.983
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:30135097 (2018): plastid
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:21533090 (2011): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : cellulose synthase-like D5
Curator
Summary (TAIR10)
Encodes a gene similar to cellulose synthase. Knock-out mutant has reduced growth, reduced xylan level and reduced xylan synthase activity in stems.
Computational
Description (TAIR10)
cellulose synthase-like D5 (CSLD5); CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150); BEST Arabidopsis thaliana protein match is: cellulose synthase-like D3 (TAIR:AT3G03050.1); Has 3375 Blast hits to 3003 proteins in 709 species: Archae - 13; Bacteria - 1269; Metazoa - 102; Fungi - 19; Plants - 1879; Viruses - 2; Other Eukaryotes - 91 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1215eggNOG:ENOG410IEH4EMBL:KJ139033EnsemblPlants:AT1G02730
EnsemblPlants:AT1G02730.1entrez:839467ExpressionAtlas:W8QPC8Gene3D:3.30.40.10
GeneID:839467GO:GO:0016021GO:GO:0016760GO:GO:0030244
Gramene:AT1G02730.1gramene_pathway:2.4.1.12gramene_pathway:PWY-1001gramene_plant_reactome:1119314
gramene_plant_reactome:6875373hmmpanther:PTHR13301hmmpanther:PTHR13301:SF58InterPro:IPR005150
InterPro:IPR013083InterPro:IPR029044KEGG:ath:AT1G02730KO:K00770
OMA:HVIDCSMPaxDb:W8QPC8Pfam:PF03552Pfam:PF14570
Pfam:Q9SRW9PhylomeDB:W8QPC8ProteinModelPortal:W8QPC8RefSeq:NP_171773.1
SMR:W8QPC8STRING:3702.AT1G02730.1SUPFAM:SSF53448SUPFAM:SSF57850
tair10-symbols:ATCSLD5tair10-symbols:CSLD5tair10-symbols:SOS6TMHMM:TMhelix
UniGene:At.42583UniProt:Q9SRW9UniProt:W8QPC8
Coordinates (TAIR10) chr1:-:594697..598473
Molecular Weight (calculated) 132594.00 Da
IEP (calculated) 7.82
GRAVY (calculated) -0.28
Length 1181 amino acids
Sequence (TAIR10)
(BLAST)
0001: MVKSAASQSP SPVTITVTPC KGSGDRSLGL TSPIPRASVI TNQNSPLSSR ATRRTSISSG NRRSNGDEGR YCSMSVEDLT AETTNSECVL SYTVHIPPTP
0101: DHQTVFASQE SEEDEMLKGN SNQKSFLSGT IFTGGFKSVT RGHVIDCSMD RADPEKKSGQ ICWLKGCDEK VVHGRCECGF RICRDCYFDC ITSGGGNCPG
0201: CKEPYRDIND DPETEEEDEE DEAKPLPQMG ESKLDKRLSV VKSFKAQNQA GDFDHTRWLF ETKGTYGYGN AVWPKDGYGI GSGGGGNGYE TPPEFGERSK
0301: RPLTRKVSVS AAIISPYRLL IALRLVALGL FLTWRVRHPN REAMWLWGMS TTCELWFALS WLLDQLPKLC PVNRLTDLGV LKERFESPNL RNPKGRSDLP
0401: GIDVFVSTAD PEKEPPLVTA NTILSILAVD YPVEKLACYL SDDGGALLTF EALAQTASFA STWVPFCRKH NIEPRNPEAY FGQKRNFLKN KVRLDFVRER
0501: RRVKREYDEF KVRINSLPEA IRRRSDAYNV HEELRAKKKQ MEMMMGNNPQ ETVIVPKATW MSDGSHWPGT WSSGETDNSR GDHAGIIQAM LAPPNAEPVY
0601: GAEADAENLI DTTDVDIRLP MLVYVSREKR PGYDHNKKAG AMNALVRTSA IMSNGPFILN LDCDHYIYNS MALREGMCFM LDRGGDRICY VQFPQRFEGI
0701: DPNDRYANHN TVFFDVSMRA LDGLQGPMYV GTGCIFRRTA LYGFSPPRAT EHHGWLGRRK VKISLRRPKA MMKKDDEVSL PINGEYNEEE NDDGDIESLL
0801: LPKRFGNSNS FVASIPVAEY QGRLIQDLQG KGKNSRPAGS LAVPREPLDA ATVAEAISVI SCFYEDKTEW GKRVGWIYGS VTEDVVTGYR MHNRGWRSIY
0901: CVTKRDAFRG TAPINLTDRL HQVLRWATGS VEIFFSRNNA IFATRRMKFL QRVAYFNVGM YPFTSLFLIV YCILPAISLF SGQFIVQSLD ITFLIYLLSI
1001: TLTLCMLSLL EIKWSGITLH EWWRNEQFWV IGGTSAHPAA VLQGLLKVIA GVDISFTLTS KSSAPEDGDD EFADLYVVKW SFLMVPPLTI MMVNMIAIAV
1101: GLARTLYSPF PQWSKLVGGV FFSFWVLCHL YPFAKGLMGR RGRVPTIVFV WSGLLSIIVS LLWVYINPPS GKQDYMQFQF P
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)