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AT4G33400.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.686
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23543785 (2013): endoplasmic reticulum endoplasmic reticulum membrane
  • PMID:23543785 (2013): Golgi Golgi apparatus
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Vacuolar import/degradation, Vid27-related protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Vacuolar import/degradation, Vid27-related protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cytosol, nucleus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), Vacuolar import/degradation, Vid27-related (InterPro:IPR013863); BEST Arabidopsis thaliana protein match is: Vacuolar import/degradation, Vid27-related protein (TAIR:AT3G19240.1); Has 271 Blast hits to 271 proteins in 130 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 139; Plants - 79; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5167eggNOG:KOG2395EMBL:AL035678EMBL:AL161583
EMBL:AY096497EMBL:BT004415EMBL:CP002687EnsemblPlants:AT4G33400
EnsemblPlants:AT4G33400.1entrez:829477Gene3D:2.130.10.10GeneID:829477
GO:GO:0005634GO:GO:0005829GO:GO:0005886Gramene:AT4G33400.1
hmmpanther:PTHR31913hmmpanther:PTHR31913:SF1HOGENOM:HOG000239561InterPro:IPR013863
InterPro:IPR015943KEGG:ath:AT4G33400ncoils:CoilOMA:WANPEKA
Pfam:PF08553PhylomeDB:Q9SZB7PIR:T05991ProMEX:Q9SZB7
Proteomes:UP000006548RefSeq:NP_195066.1SMR:Q9SZB7STRING:3702.AT4G33400.1
SUPFAM:0049172TAIR:AT4G33400UniGene:At.27712UniProt:Q9SZB7
Coordinates (TAIR10) chr4:-:16078189..16080410
Molecular Weight (calculated) 71632.60 Da
IEP (calculated) 4.97
GRAVY (calculated) -0.57
Length 645 amino acids
Sequence (TAIR10)
(BLAST)
001: MGASHSHEDL EICSSDEDEY EEYEEGREGE EEEETFQDSR DDTLGISSSG GRRLRPKSPS SSLDDVEAKL QALKLKYPLT QSAPSTQNSA RLFRYINGNT
101: PKAKWVTAEK LTAYCFVKTN KGDEDDEDDD ENGDVENEWW ILKVGSKIRE KVSDEMQLKA YKDQRRVDFV AKAVWAMKFA SSEDFSVFVS SYNNCLFENN
201: HGVEFNEANK AKIYGKDFIG WANPEAADDS MWEDADDILL QSPGGGSATP ARDTQDLTEA FEEATSEGIH SLALGALDNS FLVGDSGIQV FKNMRQGIQG
301: KGVCVNFEPG YGRTHSSAPK KALLMRAETN MLLMSPMSQT PHSRGIHQLD IETGKIISEW KFEKDGVDIS MSDITNDGKG AQLDPSASTF LGLDNNRLCR
401: WDMRDRYGMV QDLATANTPV LNWAQGHQFS RGTNFQCFAT TGDGSIVVGS LDGKIRLYSS NTMRQAKTAF PGLGAPVTHV DATFDGKWIV GTTDTYLIVI
501: CTLFTDKSGK TKTGFEGRMG NKIAAPRLLK LRPLDAHLAG SDNKFRNAQF SWVTEDGKQE RHVVATVGKF SVIWNFQQVK NGSHECYHDQ EGLKKCYCYK
601: IVLRNESIVD SRFMNDNFAI SGSPEAPLVI ATPMKVSSFS LSSKR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)