AT4G33400.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.686 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Vacuolar import/degradation, Vid27-related protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Vacuolar import/degradation, Vid27-related protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cytosol, nucleus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), Vacuolar import/degradation, Vid27-related (InterPro:IPR013863); BEST Arabidopsis thaliana protein match is: Vacuolar import/degradation, Vid27-related protein (TAIR:AT3G19240.1); Has 271 Blast hits to 271 proteins in 130 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 139; Plants - 79; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:16078189..16080410 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 71632.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.97 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.57 | ||||||||||||||||||||||||||||||||||||
| Length | 645 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGASHSHEDL EICSSDEDEY EEYEEGREGE EEEETFQDSR DDTLGISSSG GRRLRPKSPS SSLDDVEAKL QALKLKYPLT QSAPSTQNSA RLFRYINGNT 101: PKAKWVTAEK LTAYCFVKTN KGDEDDEDDD ENGDVENEWW ILKVGSKIRE KVSDEMQLKA YKDQRRVDFV AKAVWAMKFA SSEDFSVFVS SYNNCLFENN 201: HGVEFNEANK AKIYGKDFIG WANPEAADDS MWEDADDILL QSPGGGSATP ARDTQDLTEA FEEATSEGIH SLALGALDNS FLVGDSGIQV FKNMRQGIQG 301: KGVCVNFEPG YGRTHSSAPK KALLMRAETN MLLMSPMSQT PHSRGIHQLD IETGKIISEW KFEKDGVDIS MSDITNDGKG AQLDPSASTF LGLDNNRLCR 401: WDMRDRYGMV QDLATANTPV LNWAQGHQFS RGTNFQCFAT TGDGSIVVGS LDGKIRLYSS NTMRQAKTAF PGLGAPVTHV DATFDGKWIV GTTDTYLIVI 501: CTLFTDKSGK TKTGFEGRMG NKIAAPRLLK LRPLDAHLAG SDNKFRNAQF SWVTEDGKQE RHVVATVGKF SVIWNFQQVK NGSHECYHDQ EGLKKCYCYK 601: IVLRNESIVD SRFMNDNFAI SGSPEAPLVI ATPMKVSSFS LSSKR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)