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AT1G15660.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : centromere protein C
Curator
Summary (TAIR10)
Encodes a homologue of the human centromeric protein C (CENP-C). CENP-C co-localizes with the 180 bp centromeric regions of chromosomes throughout the cell cycle, but does not completely cover the 180 bp regions.
Computational
Description (TAIR10)
centromere protein C (CENP-C); Has 380 Blast hits to 353 proteins in 129 species: Archae - 0; Bacteria - 6; Metazoa - 108; Fungi - 26; Plants - 78; Viruses - 8; Other Eukaryotes - 154 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410INH9eggNOG:ENOG410Y7NPEMBL:AY693798EMBL:CP002684
EnsemblPlants:AT1G15660EnsemblPlants:AT1G15660.1entrez:838135GeneID:838135
GO:GO:0000775GO:GO:0000776GO:GO:0005634GO:GO:0019237
GO:GO:0051382Gramene:AT1G15660.1hmmpanther:PTHR16684InterPro:IPR028386
KEGG:ath:AT1G15660OMA:REWQKQTPANTHER:PTHR16684PhylomeDB:Q66LG9
Proteomes:UP000006548RefSeq:NP_173018.2STRING:3702.AT1G15660.1TAIR:AT1G15660
tair10-symbols:CENP-CUniGene:At.41920UniProt:Q66LG9
Coordinates (TAIR10) chr1:+:5381230..5385057
Molecular Weight (calculated) 78938.90 Da
IEP (calculated) 8.08
GRAVY (calculated) -0.96
Length 705 amino acids
Sequence (TAIR10)
(BLAST)
001: MADVSRSSSL YTEEDPLQAY SGLSLFPRTL KSLSNPLPPS YQSEDLQQTH TLLQSMPFEI QSEHQEQAKA ILEDVDVDVQ LNPIPNKRER RPGLDRKRKS
101: FSLHLTTSQP PPVAPSFDPS KYPRSEDFFA AYDKFELANR EWQKQTGSSV IDIQENPPSR RPRRPGIPGR KRRPFKESFT DSYFTDVINL EASEKEIPIA
201: SEQSLESATA AHVTTVDREV DDSTVDTDKD LNNVLKDLLA CSREELEGDG AIKLLEERLQ IKSFNIEKFS IPEFQDVRKM NLKASGSNPP NRKSLSDIQN
301: ILKGTNRVAV RKNSHSPSPQ TIKHFSSPNP PVDQFSFPDI HNLLPGDQQP SEVNVQPIAK DIPNTSPTNV GTVDVASPFN DSVVKRSGED DSHIHSGIHR
401: SHLSRDGNPD ICVMDSISNR SSAMLQKNVD MRTKGKEVDV PMSESGANRN TGDRENDAEI NEETDNLERL AECASKEVTR PFTVEEDSIP YQQGASSKSP
501: NRAPEQYNTM GGSLEHAEHN QGLHEEENVN TGSASGLQVE NAPEVHKYSH KQTNKRRKRG SSDSNVKKRS KTVHGETGGD KQMKTLPHES RAKKQTKGKS
601: NEREEKKPKK TLTHEGKLFS CRKSLAAAGT KIEGGVRRST RIKSRPLEYW RGERFLYGRI HESLTTVIGI KYASPGEGKR DSRASKVKSF VSDEYKKLVD
701: FAALH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)