AT2G32590.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Barren (InterPro:IPR008418); Has 467 Blast hits to 447 proteins in 202 species: Archae - 0; Bacteria - 4; Metazoa - 147; Fungi - 168; Plants - 39; Viruses - 1; Other Eukaryotes - 108 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:13829420..13833209 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 75368.80 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.41 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.83 | ||||||||||||||||||||||||||||||||||||||||
| Length | 671 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDESLTPNPK QKPASTTTRI QAPTSPFFLG SNDDRLEREQ ARAARAAASR RRSVIFARGS QPETESDPCF DKQQILELFQ NCIKLASENK INQKNTWELN 101: LIDHLCEIIK VEDENNTETN FQKASCTLEA GVKIYSMRVD SVHSEAYKVL GGITRAGHDD GGDHEDAAGA VENATNQKKQ PEKKISPLST LEPSFDALNV 201: KKFDVAFAVD PLYHQTSAQF DEGGAKGLLL NNLGVYGGCQ VLFDSQEIPG KLVSSANKHD KSETIDLSFV KECVEQMVLN MRKKDEIVPS LRAIINQFDE 301: ENQRPSDTFS CGQQTTESFD ISHGNDASYA DDDEGYENFG TSFDYEGQSG DVDENFGPNE AEPIYSNFHE EVEPASLQDM DSDDRLENVD DYLFLSLGIS 401: SKQNSWAGPD HWKYRKTKGP DVQPASEIKS SPPAKKTRKK KQAEPELDFA KALEEEMPDI FAPPKNPKTL LLPASRTPCQ TKLPEDCHYQ PENLIKLFLL 501: PNVMCLGRRR RKNSGETSRQ QPDDYEHGES WGNDNVYDDD DGPFDDNEND QSDAEDTNTL ISQPRQVNKI DVQYDKASKQ VDVQVLKETL WECLQESHQP 601: PIQDEEHQQE PPESRSFKVL LASFPDDCQA AERTQDISPH LCFICLLHLA NEHNLSLIGS QNLDDLTIHL A |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)