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AT5G37630.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ARM repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
EMBRYO DEFECTIVE 2656 (EMB2656); FUNCTIONS IN: binding; INVOLVED IN: mitotic chromosome condensation, embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); Has 333 Blast hits to 316 proteins in 147 species: Archae - 0; Bacteria - 4; Metazoa - 113; Fungi - 138; Plants - 47; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5218eggNOG:KOG2025EMBL:CP002688EnsemblPlants:AT5G37630
EnsemblPlants:AT5G37630.1entrez:833741Gene3D:1.25.10.10GeneID:833741
GO:GO:0000796GO:GO:0007076GO:GO:0009506Gramene:AT5G37630.1
hmmpanther:PTHR14418hmmpanther:PTHR14418:SF5InParanoid:F4K790InterPro:IPR011989
InterPro:IPR016024InterPro:IPR025977InterPro:IPR027165KEGG:ath:AT5G37630
KO:K06678ncoils:CoilOMA:IDLVTWHPANTHER:PTHR14418
PaxDb:F4K790Pfam:PF12719PRIDE:F4K790ProteinModelPortal:F4K790
Proteomes:UP000006548Reactome:R-ATH-2514853RefSeq:NP_198579.2SMR:F4K790
STRING:3702.AT5G37630.1SUPFAM:SSF48371TAIR:AT5G37630tair10-symbols:EMB2656
UniGene:At.30475UniProt:F4K790
Coordinates (TAIR10) chr5:+:14947407..14952546
Molecular Weight (calculated) 116757.00 Da
IEP (calculated) 4.80
GRAVY (calculated) -0.21
Length 1051 amino acids
Sequence (TAIR10)
(BLAST)
0001: MGEESEIAMA SADRNNLTQK IAKILNETRT SYATHNRKLK ELATIRSKLS SSESESESVS SSILQFSSVF LKTLTPLFIA AQRRTAAAER VVRFVAEFAC
0101: LRSNSDGDSD CDEFLEEFLK FLVAGSVAAN RNARFRACQI ISEIILRLPD EVEVADELWD DVIDCMMLRV RDKVPVIRTF AVRSLSRFVN DPENSDILDL
0201: LLEVLPLEQN PEVRKTIVLS LPPSNATTQA IIDCTLDVNE SVRKAAYSVL ANKVPLQSLS IKLRTTILQR GLADRAVNVS TECLKLMKEQ WLANYCEGDP
0301: ITFLKYLDVE TYESVAESAL EVLLSEGLIM PSDDKSIQQY ILSADGETRD ESTCSAPSIQ LMEPEIALYW RIICRKVHQS AQAKGSDAAT AMGAEAAVYA
0401: AEASDANDLL ERILPATVSD YVDLVKAHIE AGPNHHFASR QLLLLGTMLD FSDAMLHKTV SSFVQELLRR PFEQELDEDG NSIVIGDGIN LGGDKDWAEA
0501: VSKLAKKVHA APGEYEEVIL VVVEEVARPC RERTADFLQW MHMLSLTSLL LENGKSLHSL QGKAIEPEEI LHALLLPGAK HTHLDVQRIA IKGLGLFGLL
0601: EKKPSEELVR QLRAAFCRSP PPISIMACKA LVDLGMWHSP TEVDKAMGQD LLSQFEDDSI DFAPIDLSNA EEDMNFKMLD LLYAGLESDD WRASTESSEN
0701: ESVKATVGEG FAKLLLLGEK YPNLPASFYP FVLGKLIALY FSEESKEQLR FKQCLSVFFE HYASLSEKHK GYVSKAFVPL VRSMWPGIDG NTKSSSYVVS
0801: NQRKRAVQVS RFILQMMQTP LYKKETRGEP ESQVNKSPED SIQHPLNCTE EGLAIRIAIE MLSFKEKKTA HEKAYVAALC KILVLLHLKP SEQNVTKLLK
0901: KLLSLLADSV RSEKDLLKEV KPVLQHLKSL DACPSEELTQ DQANSIFEIL GVSYNLEITE TTTVPQTPAP CSTKPARSRR RARIEETSSD EEEVASPPPS
1001: APNTLMTRSH RASKAAALAK IMASKVKMSN VDEDDEEEEG SSDVTADDSD E
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)