AT5G62410.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : structural maintenance of chromosomes 2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
SMC2-1 (SMC2) | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
structural maintenance of chromosomes 2 (SMC2); FUNCTIONS IN: transporter activity; INVOLVED IN: chromosome organization; LOCATED IN: condensin complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SMCs flexible hinge (InterPro:IPR010935), RecF/RecN/SMC protein, N-terminal (InterPro:IPR003395); BEST Arabidopsis thaliana protein match is: Structural maintenance of chromosomes (SMC) family protein (TAIR:AT3G47460.1); Has 126046 Blast hits to 65003 proteins in 3391 species: Archae - 1784; Bacteria - 23628; Metazoa - 52968; Fungi - 10094; Plants - 6737; Viruses - 431; Other Eukaryotes - 30404 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:25056308..25062436 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 132608.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.69 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.59 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1175 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MHIKEICLEG FKSYATRTVV SGFDPHFNAI TGLNGSGKSN ILDSICFVLG ITNLQQVRAA NLQELVYKQG QAGITKATVS VTFDNSERHR SPLGYEEHPE 0101: ITVTRQIVVG GRNKYLINGK LAQPSQVQNL FHSVQLNVNN PHFLIMQGRI TKVLNMKPPE ILSMLEEAAG TRMYENKKEA ALKTLEKKQT KVDEINKLLD 0201: HEILPALEKL RKEKSQYMQW ANGNAELDRL RRFCIAFEYV QAEKIRDNAV LGVGEMKAKL GKIDAETEKT QEEIQEFEKQ IKALTQAKEA SMGGEVKTLS 0301: EKVDSLAQEM TRESSKLNNK EDTLLGEKEN VEKIVHSIED LKKSVKERAA AVKKSEEGAA DLKQRFQELS TTLEECEKEH QGVLAGKSSG DEEKCLEDQL 0401: RDAKIAVGTA GTELKQLKTK IEHCEKELKE RKSQLMSKLE EAIEVENELG ARKNDVEHVK KALESIPYNE GQMEALEKDR GAELEVVQRL EDKVRGLSAQ 0501: LANFQFTYSD PVRNFDRSKV KGVVAKLIKV KDRSSMTALE VTAGGKLYDV VVDSEDTGKQ LLQNGALRRR VTIIPLNKIQ SYVVQPRVQQ ATARLVGKDN 0601: AELALSLVGY SDELKNAMEY VFGSTFVCKT TDVAKEVAFN RDIRTPSVTL EGDIFQPSGL LTGGSRKGGG DRLRKLHDLA EAESELQGHQ KRLADVESQI 0701: KELQPLQMKF TDVYAQLELK TYDLSLFLKR AEQNEHHKLG EAVKKLEEEL EEAKSQIKEK ELAYKNCFDA VSKLENSIKD HDKNREGRLK DLEKNIKTIK 0801: AQMQAASKDL KSHENEKEKL VMEEEAMKQE QSSLESHLTS LETQISTLTS EVDEQRAKVD ALQKIHDESL AELKLIHAKM KECDTQISGF VTDQEKCLQK 0901: LSDMKLERKK LENEVVRMET DHKDCSVKVD KLVEKHTWIA SEKQLFGKGG TDYDFESCDP YVAREKLEKL QSDQSGLEKR VNKKVMAMFE KAEDEYNALI 1001: SKKNTIENDK SKITKVIEEL DEKKKETLKV TWVKVNQDFG SIFSTLLPGT MAKLEPPEDG NFLDGLEVRV AFGKVWKQSL SELSGGQRSL LALSLILALL 1101: LFKPAPLYIL DEVDAALDLS HTQNIGRMIR AHFPHSQFIV VSLKEGMFNN ANVLFRTKFV DGVSTVQRTV TKQTK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)