AT4G14310.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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| FP Images |
Arabidopsis cell culture (peroxisomal marker)
Arabidopsis cell culture (plastidal marker)
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Transducin/WD40 repeat-like superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Transducin/WD40 repeat-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: male gametophyte; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046); Has 1777 Blast hits to 1531 proteins in 263 species: Archae - 12; Bacteria - 185; Metazoa - 638; Fungi - 156; Plants - 91; Viruses - 5; Other Eukaryotes - 690 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:8237137..8240324 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 97286.80 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.68 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.62 | ||||||||||||||||||||||||||||||||
| Length | 893 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSASTNRRRL KDINTGAGEN PSSGKKPLRS VTPLPISSKN SNPALQKSLS SKENPNPKLS HRSFGSTQKP VLRPVPRIDK SAVSGEGRVT RSTSSGLRGR 101: SSSPSDLIRV FSDLRKRNES RVIGEKGESG QDKKSGLKSS GFKQGTSEIK VEPSSVCEKA DEGSSCPVNS SKFEGSSVAR NSISDPKAHA LVGSGEKSTV 201: ALKSDSKIEK TGKGTSVALR RKSLDNVGKA MEMSKDIRGN EGSSNSTAKY PSKLHEKLAF LEGKVKKIAS DIKKTKDMLD LNNPDSSKVI ISDIHQKITG 301: IEKSMSHVID GPEKNKTTKA KSSVKGLNKE ELEDRLLPHQ RLLRSRTQSK TSSHVSKGHD SVESNKAVNA EEKPSAPVEE NAIALEFLAS LDKEKVTFMS 401: DQNALENLEV QEMDTEEPSK ENDVSKDVNL TSNLTEILRA NEALEEIDDE ENREEMELEE IDDGCMYQLN DIGSKTSTGG WFVSEGEAVI LAHDDGSCSY 501: YDVANSEVKS VYSPPDGISP NTWRDCWVVR APGADGCSGR YVVAASAGNT LESGFCSWDF YTKDIKALHI EDGSSRVSRT ALAPLPNNTS HGRNTPACAV 601: VPETQQWWYR PCGPLIASTG SFQSIVKVFD IRDGEQIMKW GVQNPVSALD YSSPLQWRNR GKLVIAETEA ISVWDVNSLH PEAQHTISSS GRKISAFHIN 701: NTDAEVGGGV RQRVSSLDAE GNDGVFCTSD SINILDFRNP SGIGAKIPKL GVNAQCVSSR GDSVFLGCTN QKSTVKKQMA SSSQVQQFSI RKQRLVSTYS 801: LPDSNSHPHH SAITQVWGNS NFVMATSGMG LFVFDTAKEE TLQQQPLTSD YGSVQTVREI IGPNDMYCPS FDYSGCRVLL ISRDRPALWR YLL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)