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AT4G03280.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31871212 (2020): mitochondrion
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:30962257 (2019): plastid
  • PMID:30865669 (2019): plastid
  • PMID:30135097 (2018): plastid
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28524096 (2017): mitochondrion
  • PMID:27943495 (2017): mitochondrion
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:25402197 (2015): plastid plastid thylakoid plastid thylakoid membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23851315 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23673981 (2013): plastid
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:23549413 (2013): plastid
  • PMID:22550958 (2012): plastid
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21531424 (2011): plastid
  • PMID:21311031 (2011): plastid
  • PMID:21311031 (2011): mitochondrion
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:19334764 (2009): plasma membrane
  • PMID:18633119 (2008): plastid plastid thylakoid
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:15322131 (2004): plastid
  • PMID:15060130 (2004): plasma membrane
  • PMID:15028209 (2004): plastid
  • PMID:14729914 (2004): plastid
  • PMID:12766230 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : photosynthetic electron transfer C
Curator
Summary (TAIR10)
Encodes the Rieske FeS center of cytochrome b6f complex. Gene is expressed in shoot but not in root. Mutant has reduced electron transport at saturating light intensities and Q-cycle activity is hypersensitive to acidification of the thylakoid lumen.
Computational
Description (TAIR10)
photosynthetic electron transfer C (PETC); FUNCTIONS IN: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity; INVOLVED IN: response to karrikin, defense response to bacterium, photosynthetic electron transport in cytochrome b6/f, nonphotochemical quenching; LOCATED IN: in 7 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Rieske [2Fe-2S] iron-sulphur domain (InterPro:IPR017941), Rieske iron-sulphur protein, C-terminal (InterPro:IPR005805), Cytochrome b6-f complex Fe-S subunit (InterPro:IPR014909), Rieske iron-sulphur protein (InterPro:IPR014349); BEST Arabidopsis thaliana protein match is: Ubiquinol-cytochrome C reductase iron-sulfur subunit (TAIR:AT5G13430.1); Has 5359 Blast hits to 5351 proteins in 1316 species: Archae - 24; Bacteria - 2813; Metazoa - 294; Fungi - 164; Plants - 410; Viruses - 0; Other Eukaryotes - 1654 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G03280-MONOMERBioCyc:ARA:GQT-2516-MONOMERBioGrid:13287EC:1.10.9.1
eggNOG:COG0723eggNOG:KOG1671EMBL:AC005275EMBL:AF370566
EMBL:AF410296EMBL:AJ243702EMBL:AJ292972EMBL:AL161496
EMBL:AY093726EMBL:CP002687EnsemblPlants:AT4G03280EnsemblPlants:AT4G03280.1
entrez:827996Gene3D:2.102.10.10GeneID:827996Genevisible:Q9ZR03
GO:GO:0005886GO:GO:0009496GO:GO:0009507GO:GO:0009512
GO:GO:0009534GO:GO:0009535GO:GO:0009579GO:GO:0009767
GO:GO:0009941GO:GO:0010196GO:GO:0016020GO:GO:0016021
GO:GO:0042742GO:GO:0045158GO:GO:0046028GO:GO:0046872
GO:GO:0051537GO:GO:0080167HAMAP:MF_01335hmmpanther:PTHR10134
hmmpanther:PTHR10134:SF5HOGENOM:HOG000255192InParanoid:Q9ZR03IntAct:Q9ZR03
InterPro:IPR005805InterPro:IPR014349InterPro:IPR014909InterPro:IPR017941
InterPro:IPR023960iPTMnet:Q9ZR03KEGG:ath:AT4G03280KO:K02636
OMA:KGDPTYIPANTHER:PTHR10134PaxDb:Q9ZR03Pfam:PF00355
Pfam:PF08802Pfam:Q9ZR03Pfscan:PS51296PhylomeDB:Q9ZR03
PIR:F85041PIR:PA0041PRIDE:Q9ZR03PRINTS:PR00162
PRO:PR:Q9ZR03PROSITE:PS51296ProteinModelPortal:Q9ZR03Proteomes:UP000006548
RefSeq:NP_192237.1RefSeq:NP_849295.1SMR:Q9ZR03STRING:3702.AT4G03280.1
SUPFAM:SSF50022TAIR:AT4G03280tair10-symbols:PETCtair10-symbols:PGR1
TCDB:3.D.3.5.2TMHMM:TMhelixUniGene:At.486UniGene:At.67366
UniProt:Q9ZR03
Coordinates (TAIR10) chr4:+:1440314..1441717
Molecular Weight (calculated) 24367.40 Da
IEP (calculated) 8.73
GRAVY (calculated) -0.09
Length 229 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSSLSPAT QLGSSRSALM AMSSGLFVKP TKMNHQMVRK EKIGLRISCQ ASSIPADRVP DMEKRKTLNL LLLGALSLPT GYMLVPYATF FVPPGTGGGG
101: GGTPAKDALG NDVVAAEWLK THGPGDRTLT QGLKGDPTYL VVENDKTLAT YGINAVCTHL GCVVPWNKAE NKFLCPCHGS QYNAQGRVVR GPAPLSLALA
201: HADIDEAGKV LFVPWVETDF RTGDAPWWS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)