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AT4G39710.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : FK506-binding protein 16-2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FK506-binding protein 16-2 (FKBP16-2); FUNCTIONS IN: FK506 binding, peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: FK506-binding protein 13 (TAIR:AT5G45680.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G39710-MONOMERBioCyc:ARA:GQT-306-MONOMERBioGrid:15406EC:5.2.1.8
eggNOG:COG0545eggNOG:KOG0549EMBL:AJ242481EMBL:AL022605
EMBL:AL161595EMBL:AY052226EMBL:CP002687EnsemblPlants:AT4G39710
EnsemblPlants:AT4G39710.1entrez:830126ExpressionAtlas:Q9SCY3GeneID:830126
Genevisible:Q9SCY3GO:GO:0000413GO:GO:0003755GO:GO:0005528
GO:GO:0005789GO:GO:0006810GO:GO:0009507GO:GO:0009535
GO:GO:0009543GO:GO:0009579GO:GO:0061077hmmpanther:PTHR10516
hmmpanther:PTHR10516:SF269HOGENOM:HOG000154887InParanoid:Q9SCY3IntAct:Q9SCY3
InterPro:IPR001179InterPro:IPR023566OMA:ATRIEYFPANTHER:PTHR10516
PaxDb:Q9SCY3Pfam:PF00254Pfam:Q9SCY3Pfscan:PS50059
PhylomeDB:Q9SCY3PIR:T05008PRIDE:Q9SCY3PRO:PR:Q9SCY3
PROSITE:PS50059ProteinModelPortal:Q9SCY3Proteomes:UP000006548RefSeq:NP_568067.1
SMR:Q9SCY3STRING:3702.AT4G39710.1SUPFAM:SSF54534TAIR:AT4G39710
tair10-symbols:FKBP16-2UniGene:At.693UniProt:Q9SCY3
Coordinates (TAIR10) chr4:-:18427249..18428325
Molecular Weight (calculated) 23260.90 Da
IEP (calculated) 8.26
GRAVY (calculated) 0.01
Length 217 amino acids
Sequence (TAIR10)
(BLAST)
001: MAISTLTLTQ SLYTRSFRPT IFFSSSSSSS FSCLCSSSSD CEPKLSVKKR VFGVGLGFLA SSILSLTPLD ADATRIDYYA TVGDPLCEYS YAKSGLGFCD
101: LDVGFGDEAP RGVLVNIHYT ARFADGTLFD SSYKRARPLT MRIGVGKVIR GLDQGILGGE GVPPMRVGGK RKLQIPPKLA YGPEPAGCFS GDCNIPGNAT
201: LLYDINFVEI YPGSNTR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)