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AT3G01440.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : PsbQ-like 1
Curator
Summary (TAIR10)
Encodes a subunit of the NAD(P)H complex located in the chloroplast thylakoid lumen.
Computational
Description (TAIR10)
PsbQ-like 1 (PQL1); FUNCTIONS IN: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity; INVOLVED IN: photosynthesis, light reaction, photosynthetic electron transport chain; LOCATED IN: in 7 components; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbQ (InterPro:IPR008797); BEST Arabidopsis thaliana protein match is: photosystem II subunit QA (TAIR:AT4G21280.1); Has 165 Blast hits to 165 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 165; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G01440-MONOMERBioGrid:6476eggNOG:ENOG410IVYCeggNOG:ENOG410YH09
EMBL:AC010870EMBL:AY070745EMBL:AY085184EMBL:AY093737
EMBL:CP002686EnsemblPlants:AT3G01440EnsemblPlants:AT3G01440.1entrez:821143
Gene3D:1.20.120.290GeneID:821143Genevisible:Q9SGH4GO:GO:0005509
GO:GO:0006810GO:GO:0009344GO:GO:0009507GO:GO:0009534
GO:GO:0009535GO:GO:0009654GO:GO:0009767GO:GO:0019684
GO:GO:0019898GO:GO:0045156Gramene:AT3G01440.1gramene_pathway:1.10.3.2
gramene_pathway:PWY-101hmmpanther:PTHR33399hmmpanther:PTHR33399:SF2HOGENOM:HOG000242094
InParanoid:Q9SGH4IntAct:Q9SGH4InterPro:IPR008797InterPro:IPR023222
KEGG:ath:AT3G01440KO:K08901OMA:VILQEVMPaxDb:Q9SGH4
Pfam:PF05757Pfam:Q9SGH4PhylomeDB:Q9SGH4PRIDE:Q9SGH4
PRO:PR:Q9SGH4ProteinModelPortal:Q9SGH4Proteomes:UP000006548RefSeq:NP_566137.1
SMR:Q9SGH4STRING:3702.AT3G01440.1SUPFAM:0048472SUPFAM:SSF101112
TAIR:AT3G01440tair10-symbols:PQL1tair10-symbols:PQL2TCDB:3.D.1.8.1
UniGene:At.28336UniProt:Q9SGH4
Coordinates (TAIR10) chr3:+:168478..169407
Molecular Weight (calculated) 24782.80 Da
IEP (calculated) 8.16
GRAVY (calculated) -0.34
Length 220 amino acids
Sequence (TAIR10)
(BLAST)
001: MAHFIDLNSL TNTLPSLPKL PESRKTGKSS GFACRRTEEF QEPDSVQITR RMTLGFAVSI GLTGILGENN VSLAQDNGFW IDGPLPIPPI YNNIVNEKTG
101: TRTFIKKGVY VADIGTKGRM YRVKKNAFDL LAMEDLIGPD TLNYVKKYLR LKSTFLFYDF DNLISAAASE DKQPLTDLAN RLFDNFEKLE DAAKTKNLAE
201: TESCYKDTKF LLQEVMTRMA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)