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AT2G39470.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : PsbP-like protein 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PsbP-like protein 2 (PPL2); FUNCTIONS IN: calcium ion binding; INVOLVED IN: photosynthesis; LOCATED IN: in 6 components; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbP (InterPro:IPR002683), Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124), Mog1/PsbP, alpha/beta/alpha sandwich (InterPro:IPR016123); BEST Arabidopsis thaliana protein match is: PsbP-like protein 1 (TAIR:AT3G55330.1); Has 344 Blast hits to 344 proteins in 81 species: Archae - 0; Bacteria - 104; Metazoa - 0; Fungi - 0; Plants - 160; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IVYPeggNOG:ENOG410Y9BCEMBL:AC004218EMBL:AY039968
EMBL:AY085632EMBL:AY133798EMBL:CP002685EnsemblPlants:AT2G39470
EnsemblPlants:AT2G39470.1entrez:818532Gene3D:3.40.1000.10GeneID:818532
Genevisible:O80634GO:GO:0005509GO:GO:0006810GO:GO:0009507
GO:GO:0009535GO:GO:0009579GO:GO:0009654GO:GO:0015979
GO:GO:0019898hmmpanther:PTHR31407hmmpanther:PTHR31407:SF10HOGENOM:HOG000232965
InParanoid:O80634InterPro:IPR002683InterPro:IPR016123KEGG:ath:AT2G39470
OMA:IYDMQERPaxDb:O80634Pfam:O80634Pfam:PF01789
PhylomeDB:O80634PIR:T00557PRIDE:O80634PRO:PR:O80634
ProteinModelPortal:O80634Proteomes:UP000006548RefSeq:NP_001031514.2RefSeq:NP_001078022.1
RefSeq:NP_565906.1SMR:O80634STRING:3702.AT2G39470.1SUPFAM:SSF55724
TAIR:AT2G39470tair10-symbols:PPL2TCDB:3.D.1.8.1UniGene:At.37167
UniGene:At.63501UniProt:O80634
Coordinates (TAIR10) chr2:+:16476335..16477653
Molecular Weight (calculated) 26964.00 Da
IEP (calculated) 8.98
GRAVY (calculated) -0.40
Length 238 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVSSLSIRC GGFSPTISHK TEILCPNPSL KACCLLSSGG KADSSESTYQ KGSGNNWKRR QALVGVGTLV ATSIPATLLL AEEIPKSYSP FVDREDGYSY
101: YYPSDWREFD FRAHDSAFKD RYLQLQNVRV RFIPTEKNDI HEVGPMEEVV YDLVKHKFAA PNQVATIYDM KERVEDGKNY YTFEYGLRTP IYATTSFATV
201: AVGNNRYYTL IVGANERRWR KVKKQLQVVA DSLKILQI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)