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AT5G38520.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:30962257 (2019): plastid
  • PMID:29967049 (2018): plastid
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:23851315 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : alpha/beta-Hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G19850.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0596eggNOG:KOG1454EMBL:AB005231EMBL:BT000448
EMBL:BT001214EMBL:CP002688EnsemblPlants:AT5G38520EnsemblPlants:AT5G38520.1
entrez:833840ESTHER:arath-At5g38520ExpressionAtlas:Q9FFW9Gene3D:3.40.50.1820
GeneID:833840GO:GO:0016787Gramene:AT5G38520.1gramene_pathway:3.1.1.3
gramene_pathway:LIPAS-PWYhmmpanther:PTHR10992hmmpanther:PTHR10992:SF752InterPro:IPR000073
InterPro:IPR029058MEROPS:S33.A02Pfam:PF12697PhylomeDB:Q9FFW9
PRINTS:PR00111Proteomes:UP000006548RefSeq:NP_198668.1SMR:Q9FFW9
STRING:3702.AT5G38520.2SUPFAM:SSF53474TAIR:AT5G38520UniGene:At.20746
UniProt:Q9FFW9
Coordinates (TAIR10) chr5:+:15421605..15423234
Molecular Weight (calculated) 39571.80 Da
IEP (calculated) 7.03
GRAVY (calculated) -0.00
Length 362 amino acids
Sequence (TAIR10)
(BLAST)
001: MRALTWTAMS PPVMSRTATS TVNLRRISLR RDRVCVRATA SSSATVSGGG VVEAVELAEI GERSKKWKWK GEYSVNYFVK DSPEEVTPAS QTVLLVHGFG
101: ASIPHWRRNI NALSKNHTVY AIDLLGFGAS DKPPGFSYTM ESWAELILNF LEEVVQKPTI LIGNSVGSLA CVIAASESRG DLVKGLVLLN CAGGMNNKAV
201: FDDWRIKLLM PLLLLIDFLL KQRGIASALF NRVKDRENLK NILTNVYGNK DNVDDTLVEI IAGPANTEGA LDAFVSILTG PPGPNPIKLI PEITKPVLVL
301: WGDQDGLTPL DGPVGKYFTS LPDQLPNFNL YVLQGVGHCP QDDRPDLVHE RLLPWLAQLS ST
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)