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AT4G16130.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27122571 (2016): mitochondrion
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : arabinose kinase
Curator
Summary (TAIR10)
Similar to galactokinase.
Computational
Description (TAIR10)
arabinose kinase (ARA1); FUNCTIONS IN: L-arabinokinase activity, ATP binding, galactokinase activity; INVOLVED IN: arabinose metabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mevalonate/galactokinase (InterPro:IPR006206), Galactokinase galactose-binding domain (InterPro:IPR019539), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), GHMP kinase (InterPro:IPR006204), Galactokinase, glycosyltransferase (InterPro:IPR012369), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721); BEST Arabidopsis thaliana protein match is: Mevalonate/galactokinase family protein (TAIR:AT3G42850.1); Has 3503 Blast hits to 3497 proteins in 1405 species: Archae - 74; Bacteria - 2553; Metazoa - 183; Fungi - 124; Plants - 132; Viruses - 0; Other Eukaryotes - 437 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G16130-MONOMERBioCyc:MetaCyc:AT4G16130-MONOMERBioGrid:12593EC:2.7.1.46
eggNOG:COG0153eggNOG:KOG0631EMBL:AK230073EMBL:AK317724
EMBL:AL161543EMBL:BT003908EMBL:CP002687EMBL:Y14404
EMBL:Z97340EnsemblPlants:AT4G16130EnsemblPlants:AT4G16130.1entrez:827299
Gene3D:3.30.230.10Gene3D:3.30.70.890GeneID:827299Genevisible:O23461
GO:GO:0005524GO:GO:0005829GO:GO:0009506GO:GO:0009702
GO:GO:0016021GO:GO:0046835Gramene:AT4G16130.1gramene_pathway:2.7.1.46
gramene_pathway:PWY-82hmmpanther:PTHR10457hmmpanther:PTHR10457:SF12HOGENOM:HOG000005811
InParanoid:O23461IntAct:O23461InterPro:IPR006204InterPro:IPR006206
InterPro:IPR012369InterPro:IPR013750InterPro:IPR014721InterPro:IPR019539
InterPro:IPR020568KEGG:00052+2.7.1.6KEGG:00520+2.7.1.46KEGG:00520+2.7.1.6
KEGG:ath:AT4G16130KO:K12446OMA:ICQPAEVPANTHER:PTHR10457
PaxDb:O23461Pfam:O23461Pfam:PF00288Pfam:PF10509
Pfam:PF13528PhylomeDB:O23461PIR:F71427PIRSF:PIRSF036399
PRIDE:O23461PRINTS:PR00959PRO:PR:O23461ProteinModelPortal:O23461
Proteomes:UP000006548RefSeq:NP_193348.1SMR:O23461STRING:3702.AT4G16130.1
SUPFAM:SSF53756SUPFAM:SSF54211SUPFAM:SSF55060TAIR:AT4G16130
tair10-symbols:ARA1tair10-symbols:ATISA1tair10-symbols:ISA1UniGene:At.218
UniGene:At.67863unipathway:UPA00214UniProt:O23461
Coordinates (TAIR10) chr4:+:9120875..9127656
Molecular Weight (calculated) 114268.00 Da
IEP (calculated) 6.24
GRAVY (calculated) -0.12
Length 1039 amino acids
Sequence (TAIR10)
(BLAST)
0001: MSERAKLQKK KKVTEDLLDS LLLLPPWRNF AISQSHQSII ESSSQRLPEK MRIDENEGVS ASSKHLVFAY YVTGHGFGHA TRVVEVVRHL IAAGHDVHVV
0101: TGAPDFVFTS EIQSPRLKIR KVLLDCGAVQ ADALTVDRLA SLEKYVETAV VPRAEILETE VEWLHSIKAD FVVSDVVPVA CRAAADAGIR SVCVTNFSWD
0201: FIYAEYVMAA GYHHRSIVWQ IAEDYSHCEF LIRLPGYCPM PAFRDVIDVP LVVRRLHKSR KEVRKELGIA EDVNVVILNF GGQPSGWNLK ETSLPTGWLC
0301: LVCGASETLE LPPNFIKLAK DAYTPDIIAA SDCMLGKIGY GTVSEALSYK VPFVFVRRDY FNEEPFLRNM LEFYQCGVEM IRRDLLMGQW TPYLERAVSL
0401: KPCYEGGING GEIAAHILQE TAIGRHCASD KLSGARRLRD AIILGYQLQR VPGRDIAIPE WYSRAENELG QSAGSSPTVQ ANENNSLVES CIDDFDILQG
0501: DVQGLSDTCT FLKSLAMLDA IHDSEKSTEK KTVRERKAAG GLFNWEEEIF VARAPGRLDV MGGIADYSGS LVLQMPIREA CHVAVQRNLP GKHRLWKHAQ
0601: ARQQAKGQVP TPVLQIVSYG SEISNRAPTF DMDLSDFMDG DEPISYEKAR KFFAQDPAQK WAAYVAGTIL VLMIELGVRF EDSISLLVSS AVPEGKGVSS
0701: SAAVEVASMS AIAAAHGLSI DPRDLAILCQ KVENHIVGAP CGVMDQMTSS CGEANKLLAM ICQPAEVVGL VEIPNHVRFW GIDSGIRHSV GGADYRSVRV
0801: GAYMGRKMIK SMASSILSPS ASSANGGNPE ELEDEGIDLL EAEASLDYLC NLSPHRYEAR YADKLPDIML GQTFIEEYAD HDDPVTVIDQ KRSYSVKAPA
0901: RHPIYENFRV KTFKALLTSA TSDEQLTALG GLLYQCHYSY SACGLGSDGT NRLVQLVQGM QHNKSNSEDG TLYGAKITGG GSGGTVCVVG RNSLRSSQQI
1001: LEIQQRYKAA TGYLPLIFEG SSPGAGKFGY LRIRRRISL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)