AT4G15840.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.645 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : BTB/POZ domain-containing protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
BTB/POZ domain-containing protein; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); Has 3394 Blast hits to 3343 proteins in 148 species: Archae - 0; Bacteria - 0; Metazoa - 3006; Fungi - 79; Plants - 135; Viruses - 80; Other Eukaryotes - 94 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:8996963..9000852 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 91791.90 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.21 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.30 | ||||||||||||||||||||||||||||||||
| Length | 836 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDQEYRNSRT TVTHHQHHHQ MRMTVPPPPS PQPSPPVLPH AESDQSTSEL RSLDCNLTSL CDHIQSEGFG SGAFSDVVVK AMGSSYHLHR LILSRSSYFR 101: TMLQGPWKEA SSPVVNLLVD DKNVNGDAIS VALAYLYGYH PKLDDDNAFR VLAAASFLDL QDLCAICTDF IISELRTSNF LAYQVFAESQ DYGIHGERVR 201: NACWGYLCQS GAVELREMLP KLSAQTLCAL LTSDELWVPS EEKRFELALY AFIANSALSN SDHSNQDSRF ERETSFPLDS AISKGKNVMD DFSFRSLDCK 301: LGHLDIEADL RDASDDVIVP LTEGVIDFQR GVSGSNLVFQ QSSNSQTNFG RPCTSVVDKT EGSVVAIEGP SEEAYHLSND SWLSGADSRN SPTLGSSSDG 401: FVVNEWGNCG VSALTWGGRV VGTRQGTGSV KGKYGFTEEE YSAFVNTFEG GSLLYCNMSF EILLNARKEL EELGFPCKAV NDGLWLQMLL SQRVQEVAAN 501: TCKRCCLISI ACACKQGFGV SHGATFNNYY CQENVQNNMM GDMDNVYVPE SSQGDGIGIF KPVRISVRGQ HIDGLAGIGC EATFVPPPAW PPTPFVYSRV 601: PINRNGQQSI ASDGSEGRID QSGEISKDGL TALVGLSQGT SGVGNNPRGE QTEGGRGSGA TVGMSEPKEP SVGTEWENAS CTISLDTKTP LCHFPPFRFG 701: VEFEDVHRLA NGHVEHSPEF FYAGSLWKIS IQAFNDEDPQ GRRTIGLFLH RRKAEIVDSV RKVHVYIDPR DKVTARYQLI CPSKREVMLF GSFKQRGTLL 801: PKAPKGWGWR TALLFDELSE LLQNGALRVA AVVQLV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)