AT3G49490.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; Has 722 Blast hits to 186 proteins in 64 species: Archae - 0; Bacteria - 30; Metazoa - 72; Fungi - 48; Plants - 38; Viruses - 0; Other Eukaryotes - 534 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:18344926..18348648 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 105350.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 4.77 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.75 | ||||||||||||||||||||||||
| Length | 953 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTDGFRYNGF SGIAYPFWLS SPPPPTPPHH PASAPPFQQS NPVESYDPAK EVFDPMMLYH DSYQRSPANW SNNPSYRENS RSQTPSSSFY ADNTQHGNSG 101: LRGEDSSYKD MLSPSGFYSS RESSSDFVSL PPTENFSERQ RLNFEPTYSS ATLAPVSSYA DMLIRNSQDS FFTPIASSGV YSSSNAVDEK RPGYYFLGSD 201: RSETMNVVSA SRVEPYMCDT DCNPSFPMPN FITQALFDGS QTGLRVGDGR SFPSNSDVCS HAPQNFLGAQ SSLQSSSVEP VNFDVLLGYG EATGHIKPLP 301: ENPNLPYPVV GSQGSRSPRS SYPLPSIINS SVSLIKDEVE GSGVSSLYQR PYTLVADSEN GVSESSLKNA TEDLNCHEPR SWSHFMVTSE GPSAPTMFSM 401: GSESGGPSAP TMKADNENAQ SAGNYKPPFE GSTTQPSEDV PTNQESCNLQ KQTFDIMDRD KKIRSLTDVG LDLSSRSNAD DVSTGRSPER HFCDQGDFPS 501: PTSYPRVSSV VNAMHNLSEV LVYECFNNGS WLKLEQLENL DKVVDNLTKC LKKITDNKTT AGEATLPTQS MHVTCPNVVD LHEAATGVAK DFQRFSVKPL 601: DSFGVKEPVD KNEMTQSIKN ILASNFPDGE ENHPQTLLYK NLWLETEAAL CSTTCMARYH RIKNEIGNLK LNNKEISADA VSFMQEPSLN TQKSVPIMNA 701: NADKDTPESI IKHGSNCGKN AATMSHDASE SSRINSDPVD AVLSVMSRSF TGGLEQTIRG NLRPDDATFA KIPDAIWQET SASTTENKHR EVIDRFQILK 801: EQETERKLKS QKLPDSDIDV IDRFQILKQQ ETNRKLKAQK CPETKKGDQE DKLEGSVMAN MGRSSDVSDV MDRFQILKRR EAEQVKKSLN SMDVDSDSEN 901: DQPQKRDHLW SDSLFPIRGH SQRETCAADT EQSASGKGYE SPTSDWEHVI KDD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)