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AT4G31670.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ubiquitin-specific protease 18
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ubiquitin-specific protease 18 (UBP18); FUNCTIONS IN: cysteine-type endopeptidase activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, MYND-type (InterPro:IPR002893), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 19 (TAIR:AT2G24640.1); Has 9064 Blast hits to 8065 proteins in 324 species: Archae - 2; Bacteria - 451; Metazoa - 4433; Fungi - 1481; Plants - 999; Viruses - 9; Other Eukaryotes - 1689 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G31670-MONOMERBioGrid:14581EC:3.4.19.12eggNOG:ENOG410XQ92
eggNOG:KOG1865EMBL:AK175467EMBL:AK176703EMBL:AL031004
EMBL:AL161579EMBL:AY142532EMBL:CP002687EnsemblPlants:AT4G31670
EnsemblPlants:AT4G31670.1entrez:829295GeneID:829295Genevisible:Q67XW5
GO:GO:0006511GO:GO:0016021GO:GO:0016579GO:GO:0036459
GO:GO:0046872Gramene:AT4G31670.1hmmpanther:PTHR24006hmmpanther:PTHR24006:SF503
HOGENOM:HOG000097839InParanoid:Q67XW5InterPro:IPR001394InterPro:IPR002893
InterPro:IPR018200InterPro:IPR028889iPTMnet:Q67XW5KEGG:ath:AT4G31670
KO:K11855MEROPS:C19.A08OMA:DDSATDHPaxDb:Q67XW5
Pfam:PF00443Pfam:PF01753Pfam:Q67XW5Pfscan:PS50235
Pfscan:PS50865PhylomeDB:Q67XW5PIR:T05103PRIDE:Q67XW5
PRO:PR:Q67XW5PROSITE:PS00972PROSITE:PS01360PROSITE:PS50235
PROSITE:PS50865ProteinModelPortal:Q67XW5Proteomes:UP000006548RefSeq:NP_194895.1
scanprosite:PS00972scanprosite:PS01360SMR:Q67XW5STRING:3702.AT4G31670.1
SUPFAM:SSF144232SUPFAM:SSF54001TAIR:AT4G31670tair10-symbols:UBP18
TMHMM:TMhelixUniGene:At.31726UniProt:Q67XW5
Coordinates (TAIR10) chr4:-:15336007..15339506
Molecular Weight (calculated) 70756.20 Da
IEP (calculated) 4.73
GRAVY (calculated) -0.38
Length 631 amino acids
Sequence (TAIR10)
(BLAST)
001: MHEVGFPLDL SVFTRLIATL FFLAVGVFYF LKNTAAKYFD IGAAAAGGFD RDFMAVDAED CSVCGNFSTK KCSRCKSVRY CSAECQRSDW SSGHQRNCRD
101: YGITTLTPSA KNGLRFRASP FGDSSASSIA LISERGQNKS SLKPREVLFP YEEFVEYFNW DNPELAPCGL MNCGNSCFAN VILQCLSWTR PLVAYLLEKG
201: HKRECMRNDW CFLCEFQTHV ERASQSRFPF SPMNIISRLT NIGGTLGYGR QEDAHEFMRY AIDMMQSVCL DEFGGEKIVP PRSQETTLIQ YIFGGLLQSQ
301: VQCTVCNHVS DQYENMMDLI VEMHGDAGSL EECLDQFTAE EWLHGDNMYK CDRCSDYVKA CKRLTIRRAP NILTIALKRY QGGRYGKLNK RISFPETLDL
401: NPYMSEGGDG SDVYKLYAVI VHLDMLNASF FGHYICYIKD FCGNWYRIDD SEIESVELED VLSQRAYMLL YSRIQARSSS SCLRSEVKDE KKTDTLDTES
501: CVKELVESSM VGAIESRSST HATIEDPVCE QSPSPSPSPS PSPSPSPSPS VLASECCSEV ERIDTLDSES NSSIDDSATD HQEDVANGNK DPEVKYQAAD
601: SWSDPTTSTP LVCTKSKPPV RDMDTKMIDA Q
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)