suba logo
AT4G16440.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
cytosol 0.991
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ferredoxin hydrogenases
Curator
Summary (TAIR10)
Encodes a [FeFe]-hydrogenase-like protein named Gollum (for Growth in different Oxygen LeveLs inflUences Morphogenesis). Heterologous expression of Gollum in E. coli indicates that it probably contains two [Fe-S] clusters with different magnetic properties. Sequence alignment analysis indicates that these two clusters would be topologically equivalent to the mesial and proximal [Fe-S] centers of [FeFe]-hydrogenases. Knockdown mutants (RNAi) show a dwarf phenotype at the normal atmospheric partial oxygen pressure of 21 kPa. This dwarf phenotype could be rescued by growing the plant under low oxygen pressure (5kPa), suggesting a role for this gene in oxygen sensing.
Computational
Description (TAIR10)
ferredoxin hydrogenases; CONTAINS InterPro DOMAIN/s: Iron hydrogenase, large subunit, C-terminal (InterPro:IPR004108), Iron hydrogenase (InterPro:IPR009016), Iron hydrogenase, small subunit-like (InterPro:IPR003149); Has 2574 Blast hits to 2544 proteins in 612 species: Archae - 1; Bacteria - 1826; Metazoa - 221; Fungi - 188; Plants - 72; Viruses - 0; Other Eukaryotes - 266 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4624eggNOG:KOG2439EMBL:AJ320258EMBL:AK117970
EMBL:AL161544EMBL:BT008777EMBL:CP002687EMBL:Z97341
EnsemblPlants:AT4G16440EnsemblPlants:AT4G16440.1entrez:827338Gene3D:4.10.260.20
GeneID:827338Genevisible:Q94CL6GO:GO:0005634GO:GO:0005829
GO:GO:0016226GO:GO:0046872GO:GO:0051536GO:GO:0051539
GO:GO:0070482Gramene:AT4G16440.1hmmpanther:PTHR11615hmmpanther:PTHR11615:SF103
HOGENOM:HOG000191744InParanoid:Q94CL6InterPro:IPR003149InterPro:IPR004108
InterPro:IPR009016KEGG:ath:AT4G16440OMA:FIGPSQDPaxDb:Q94CL6
Pfam:PF02256Pfam:PF02906PhylomeDB:Q94CL6PRIDE:Q94CL6
PRO:PR:Q94CL6ProteinModelPortal:Q94CL6Proteomes:UP000006548RefSeq:NP_567496.4
SMART:SM00902SMR:Q94CL6STRING:3702.AT4G16440.1SUPFAM:SSF53920
TAIR:AT4G16440UniGene:At.33082UniGene:At.4413UniProt:Q94CL6
Coordinates (TAIR10) chr4:-:9269263..9271510
Molecular Weight (calculated) 52506.80 Da
IEP (calculated) 6.59
GRAVY (calculated) -0.27
Length 474 amino acids
Sequence (TAIR10)
(BLAST)
001: MSEKFSPTLR LGDLNDFIAP SQACVISLKD SKPIVKKSDR PQVVIAPKQQ LEPVKISLKD CLACSGCITS AETVMLEKQS LDEFLSALSK GKDVVVSVSP
101: QSRASLAVHY DISPLQVFKK LTTFLKSLGV KAVFDTSCSR DLVLIESCNE FVSRYKQANS DDGENSQSPL PVLSSACPGW ICYAEKQLGS YVLPYVSSVK
201: SPQQAIGAAI KHHLCQALGL RLHEVYHVTV MPCYDKKLEA ARDDFVFDDG TQDNGDLKLT EVDSVLTTGE IMDLIKLKGV DFKDLEESPL DRVLTNVTEE
301: GDLYGVAGSS GGYAETIFRH AAKALFGQTI EGPLEFKTLR NSDFREVTLQ LEGKTVLKFA LCYGFQNLQN IVRRVKTRKC DYQYVEIMAC PAGCLNGGGQ
401: IKPKTGQSQK ELIHSLEATY MNDTTLNTDP YQNPTAKRLF EEWLKEPGSN EAKKYLHTQY HPVVKSVTSQ LNNW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)