suba logo
AT5G11380.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 1-deoxy-D-xylulose 5-phosphate synthase 3
Curator
Summary (TAIR10)
Encodes a protein postulated to have 1-deoxy-D-xylulose 5-phosphate synthase activity.
Computational
Description (TAIR10)
1-deoxy-D-xylulose 5-phosphate synthase 3 (DXPS3); FUNCTIONS IN: 1-deoxy-D-xylulose-5-phosphate synthase activity; INVOLVED IN: metabolic process, terpenoid biosynthetic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transketolase, C-terminal (InterPro:IPR005476), Deoxyxylulose-5-phosphate synthase (InterPro:IPR005477), Transketolase-like, C-terminal (InterPro:IPR015941), Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II (InterPro:IPR009014), Transketolase-like, pyrimidine-binding domain (InterPro:IPR005475); BEST Arabidopsis thaliana protein match is: Deoxyxylulose-5-phosphate synthase (TAIR:AT4G15560.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G11380-MONOMEReggNOG:COG1154eggNOG:ENOG410IT57EMBL:AL360314
EMBL:CP002688EnsemblPlants:AT5G11380EnsemblPlants:AT5G11380.1entrez:831009
ExpressionAtlas:Q9LFL9Gene3D:3.40.50.920Gene3D:3.40.50.970GeneID:831009
GO:GO:0008661GO:GO:0016114Gramene:AT5G11380.1gramene_pathway:2.2.1.7
gramene_pathway:NONMEVIPP-PWYhmmpanther:PTHR11624hmmpanther:PTHR11624:SF64HOGENOM:HOG000012988
InterPro:IPR005475InterPro:IPR005477InterPro:IPR009014InterPro:IPR029061
InterPro:IPR033247InterPro:IPR033248KEGG:00730+2.2.1.7KEGG:00900+2.2.1.7
OMA:EISFIMSPANTHER:PTHR11624Pfam:PF02779Pfam:PF02780
Pfam:PF13292PhylomeDB:Q9LFL9Proteomes:UP000006548RefSeq:NP_196699.1
SMART:SM00861SMR:Q9LFL9STRING:3702.AT5G11380.1SUPFAM:SSF52518
SUPFAM:SSF52922TAIR:AT5G11380tair10-symbols:DXPS3TIGRfam:TIGR00204
TIGRFAMs:TIGR00204UniGene:At.32264unipathway:UPA00064UniProt:Q9LFL9
Coordinates (TAIR10) chr5:+:3630172..3633250
Molecular Weight (calculated) 76646.40 Da
IEP (calculated) 6.51
GRAVY (calculated) 0.00
Length 700 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSASIGYQF GISARFYGNF NLSSDITVSS LPCKLDVSIK SLFSAPSSTH KEYSNRARVC SLPNTDGYCD EKFETPILDS IETPLQLKNL SVKELKLLAD
101: EIRTELHSVL WKKTQKSMNP SFAAIELTLA LHYVFRAPVD NILWDAVEQT YAHKVLTRRW SAIPSRQNSG ISGVTSRLES EYDSFGTGHG CNSISAGLGL
201: AVARDMKGKR DRVVAVIDNV TITAGQAYEA MSNAGYLDSN MIVILNDSRH SLHPNMEEGS KASISALSSI MSKIQSSKVF RKFRELAKAM TKRIGKGMYE
301: WAAKVDEYAR GMVGPTGSTL FEELGLYYIG PVDGHNIEDL VCVLREVSSL DSMGPVLVHV ITEGNRDAET VKNIMVKDRR TYSDCFVEAL VMEAEKDRDI
401: VVVHAGMEMD PSLLTFQERF PDRFFNVGMA EQHAVTFSAG LSSGGLKPFC IIPSAFLQRA YDQVVHDVDR QRKAVRFVIT SAGLVGSDGP VQCGAFDIAF
501: MSSLPNMIAM APADEDELVN MVATAAYVTD RPVCFRFPRG SIVNMNYLVP TGLPIEIGRG RVLVEGQDVA LLGYGAMVQN CLHAHSLLSK LGLNVTVADA
601: RFCKPLDIKL VRDLCQNHKF LITVEEGCVG GFGSHVAQFI ALDGQLDGNI KWRPIVLPDG YIEEASPREQ LALAGLTGHH IAATALSLLG RTREALLLMS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)