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AT3G60620.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30135097 (2018): plastid
  • PMID:29967049 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24872594 (2014): plastid plastid envelope plastid inner membrane
  • PMID:22923678 (2012): plastid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:18431481 (2008): plastid
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : cytidinediphosphate diacylglycerol synthase 5
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
cytidinediphosphate diacylglycerol synthase 5 (CDS5); FUNCTIONS IN: phosphatidate cytidylyltransferase activity; INVOLVED IN: phospholipid biosynthetic process; LOCATED IN: chloroplast, plastid, membrane, chloroplast envelope; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidate cytidylyltransferase (InterPro:IPR000374); BEST Arabidopsis thaliana protein match is: cytidinediphosphate diacylglycerol synthase 4 (TAIR:AT2G45150.1); Has 7499 Blast hits to 7495 proteins in 2619 species: Archae - 0; Bacteria - 5196; Metazoa - 180; Fungi - 139; Plants - 139; Viruses - 0; Other Eukaryotes - 1845 (source: NCBI BLink).
Protein Annotations
EC:2.7.7.41eggNOG:COG0575eggNOG:KOG1440EMBL:AL162295
EMBL:AY035018EMBL:AY059084EMBL:CP002686EnsemblPlants:AT3G60620
EnsemblPlants:AT3G60620.1entrez:825233GeneID:825233Genevisible:Q9M001
GO:GO:0004605GO:GO:0006655GO:GO:0009507GO:GO:0009535
GO:GO:0009536GO:GO:0009941GO:GO:0016021GO:GO:0016024
GO:GO:0031969Gramene:AT3G60620.1gramene_pathway:2.7.7.41gramene_pathway:PWY-5667
gramene_pathway:PWY0-1319hmmpanther:PTHR13773hmmpanther:PTHR13773:SF3HOGENOM:HOG000006169
InterPro:IPR000374KEGG:00564+2.7.7.41KEGG:04070+2.7.7.41KEGG:ath:AT3G60620
OMA:WLLLQPKPaxDb:Q9M001Pfam:PF01148Pfam:Q9M001
PhylomeDB:Q9M001PIR:T47873PRIDE:Q9M001PRO:PR:Q9M001
PROSITE:PS01315ProteinModelPortal:Q9M001Proteomes:UP000006548RefSeq:NP_191621.1
scanprosite:PS01315SMR:Q9M001STRING:3702.AT3G60620.1TAIR:AT3G60620
tair10-symbols:CDS5TMHMM:TMhelixUniGene:At.4707UniPathway:UPA00557
UniProt:Q9M001
Coordinates (TAIR10) chr3:+:22406537..22408239
Molecular Weight (calculated) 43254.00 Da
IEP (calculated) 9.41
GRAVY (calculated) 0.34
Length 399 amino acids
Sequence (TAIR10)
(BLAST)
001: MAPFVEVCRY KPLPLSLSSL CTCPCRSSPR KYLILPQFSE KYPKPLLSHS RFTPISVNRR VITAVARAES NQIGDDANSK EEHNIDQELQ NVEEDSSLDD
101: QKQKSRSQFK KRVTFGLGIG LSVGGIVLAG GWVFTVAVAA AVLLSAREYF ELVRSKGIAQ GMTPPPRYLS RVCSIICALM PILTLYFGHI DISITSAAFV
201: VAMALLLQRG NPRFSQLSST MFGLFYCGYL PCFWVKLRCG LTAPVLNTGI GRSWPTILGG QAHWTVGLVA ILISFCGIIA SDTFAFLGGK AFGRTPLISI
301: SPKKTWEGAF AGLVGCISIT ILLSKSLSWP QSLVSTIAFG VLNFFGSVFG DLTESMIKRD AGVKDSGSLI PGHGGILDRV DSYIFTGALA YSFVRLHGV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)