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AT2G22425.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.966
What is SUBAcon?
Predictors External Curations
AdaBoost: plasma membraneBaCelLo: endoplasmic reticulumBaCelLo: extracellular
BaCelLo: golgiiPSORT: endoplasmic reticulumiPSORT: extracellular
iPSORT: golgiMultiLoc: golgiPlant-mPloc: endoplasmic reticulum
Predotar: endoplasmic reticulumPredotar: extracellularPredotar: golgi
PredSL: endoplasmic reticulumPredSL: extracellularPredSL: golgi
PProwler: endoplasmic reticulumPProwler: extracellularPProwler: golgi
SLPFA: endoplasmic reticulumSLPFA: extracellularSLPFA: golgi
SLP-Local: cytosolSLP-Local: nucleusSubLoc: extracellular
TargetP: endoplasmic reticulumTargetP: extracellularTargetP: golgi
WoLF PSORT: endoplasmic reticulumYLoc: extracellular
 SwissProt : (microsomes are not ordinarily present in living cells) 16381842
SwissProt : endoplasmic reticulum 16381842
SwissProt : plasma membrane 16381842
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Microsomal signal peptidase 12 kDa subunit (SPC12)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)		 Microsomal signal peptidase 12 kDa subunit (SPC12); FUNCTIONS IN: peptidase activity; INVOLVED IN: signal peptide processing; LOCATED IN: endomembrane system, signal peptidase complex, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Microsomal signal peptidase 12kDa subunit (InterPro:IPR009542); BEST Arabidopsis thaliana protein match is: Microsomal signal peptidase 12 kDa subunit (SPC12) (TAIR:AT4G40042.1); Has 315 Blast hits to 315 proteins in 147 species: Archae - 0; Bacteria - 0; Metazoa - 142; Fungi - 81; Plants - 67; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Protein Annotations
BioGrid:2127EC:3.4.-.-eggNOG:ENOG410J4PDeggNOG:ENOG410XV9J
EMBL:AC006592EMBL:AF428383EMBL:AY087762EMBL:AY143801
EMBL:CP002685EnsemblPlants:AT2G22425EnsemblPlants:AT2G22425.1EnsemblPlants:AT2G22425.2
entrez:816774GeneID:816774Genevisible:Q944J0GO:GO:0005787
GO:GO:0006465GO:GO:0008233GO:GO:0016021Gramene:AT2G22425.1
Gramene:AT2G22425.2hmmpanther:PTHR13202hmmpanther:PTHR13202:SF0HOGENOM:HOG000171962
InParanoid:Q944J0InterPro:IPR009542KEGG:00261+3.4.-.-KEGG:00310+3.4.-.-
KEGG:00550+3.4.-.-KEGG:00780+3.4.-.-KEGG:ath:AT2G22425KO:K12946
OMA:NKHPVKWPANTHER:PTHR13202PaxDb:Q944J0Pfam:PF06645
Pfam:Q944J0PhylomeDB:Q944J0PRIDE:Q944J0PRO:PR:Q944J0
ProteinModelPortal:Q944J0Proteomes:UP000006548RefSeq:NP_001077942.1RefSeq:NP_565535.1
STRING:3702.AT2G22425.1TAIR:AT2G22425TMHMM:TMhelixUniGene:At.26256
UniProt:Q944J0
Coordinates (TAIR10) chr2:+:9515079..9515357
Molecular Weight (calculated) 10373.90 Da
IEP (calculated) 9.87
GRAVY (calculated) 0.16
Length 92 amino acids
Sequence (TAIR10)
(BLAST) 		1: MDWQGQKLVE QLMQILLVIS GVVAVVVGYT TESFRTMMLI YAGGVVLTTL VTVPNWPFYN LHPLKWLDPS EAEKHPKPEV VSVASKKKFS KK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)