AT3G02450.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plastid 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : cell division protein ftsH, putative | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
cell division protein ftsH, putative; FUNCTIONS IN: in 6 functions; LOCATED IN: integral to membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: FTSH protease 8 (TAIR:AT1G06430.1); Has 43920 Blast hits to 41347 proteins in 3350 species: Archae - 1585; Bacteria - 19560; Metazoa - 4991; Fungi - 3838; Plants - 3354; Viruses - 31; Other Eukaryotes - 10561 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:-:502876..505030 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 69413.80 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 10.19 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.28 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 622 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MATFNVLCSN RFRFNGGYSP EKFNRKVSSR SSELNVCVSR IRTQSFSCRR LGGFMEIGET RLGVIRVHGD SRNRFSCNSE IKRLVTGDYG DKETRIGENG 101: RNKGKRRRFS LRLRPRLRLV RMRLGRFDFR ASMEDFRYFL KKNLKRVILS TGVALIFGLC YLFLRLTAVP SPSIVPYSDF VTNLRGGSVS KVLLEEGSRR 201: IYYNTDENVE VVDDVHKSET LEDPAIQIDG GTVTEAVTKD DTPRKVRALP PVWKYVTRKV DHDEKFLLSL MREKGITYSS APQSALMSMR TTLITIISLW 301: IPLTPLMWLL YRQLSASNSP AKKRRSKNPT VGFDDVEGVD SAKDELVEIV SCLQGSINYK KLGARLPRGV LLVGPPGTGK TLLARAVAGE AGVPFFSVSA 401: SEFVELFVGR GAARIRDLFN AARKNSPSII FIDELDAVGG KRGRSFNDER DQTLNQLLTE MDGFESDTKV IVIAATNRPE ALDSALCRPG RFSRKVLVAE 501: PDQEGRRKIL AIHLRDVPLE EDAFLICDLV ASLTPGFVGA DLANIVNEAA LLAARRGGEA VAREDIMEAI ERAKFGINDK EARPRTLGNE LSKMFPWMPS 601: LARRNGPDQD GLQGPLGYQT LS |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)