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AT3G02450.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : cell division protein ftsH, putative
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
cell division protein ftsH, putative; FUNCTIONS IN: in 6 functions; LOCATED IN: integral to membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: FTSH protease 8 (TAIR:AT1G06430.1); Has 43920 Blast hits to 41347 proteins in 3350 species: Archae - 1585; Bacteria - 19560; Metazoa - 4991; Fungi - 3838; Plants - 3354; Viruses - 31; Other Eukaryotes - 10561 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0465eggNOG:KOG0731EMBL:AC021640EMBL:AY062811
EMBL:AY087136EMBL:BT008384EMBL:CP002686EnsemblPlants:AT3G02450
EnsemblPlants:AT3G02450.1entrez:821139Gene3D:3.40.50.300GeneID:821139
Genevisible:Q9M895GO:GO:0004222GO:GO:0005524GO:GO:0008270
GO:GO:0009941GO:GO:0016021GO:GO:0031969Gramene:AT3G02450.1
hmmpanther:PTHR23076hmmpanther:PTHR23076:SF61HOGENOM:HOG000217276InterPro:IPR003593
InterPro:IPR003959InterPro:IPR003960InterPro:IPR011546InterPro:IPR027417
iPTMnet:Q9M895KEGG:ath:AT3G02450OMA:RVCFVSPPaxDb:Q9M895
Pfam:PF00004Pfam:PF06480PRIDE:Q8LBL6PROSITE:PS00674
ProteinModelPortal:Q9M895Proteomes:UP000006548RefSeq:NP_186894.1scanprosite:PS00674
SMART:SM00382SMR:Q9M895STRING:3702.AT3G02450.1SUPFAM:SSF52540
TAIR:AT3G02450TMHMM:TMhelixUniGene:At.27477UniProt:Q9M895
Coordinates (TAIR10) chr3:-:502876..505030
Molecular Weight (calculated) 69413.80 Da
IEP (calculated) 10.19
GRAVY (calculated) -0.28
Length 622 amino acids
Sequence (TAIR10)
(BLAST)
001: MATFNVLCSN RFRFNGGYSP EKFNRKVSSR SSELNVCVSR IRTQSFSCRR LGGFMEIGET RLGVIRVHGD SRNRFSCNSE IKRLVTGDYG DKETRIGENG
101: RNKGKRRRFS LRLRPRLRLV RMRLGRFDFR ASMEDFRYFL KKNLKRVILS TGVALIFGLC YLFLRLTAVP SPSIVPYSDF VTNLRGGSVS KVLLEEGSRR
201: IYYNTDENVE VVDDVHKSET LEDPAIQIDG GTVTEAVTKD DTPRKVRALP PVWKYVTRKV DHDEKFLLSL MREKGITYSS APQSALMSMR TTLITIISLW
301: IPLTPLMWLL YRQLSASNSP AKKRRSKNPT VGFDDVEGVD SAKDELVEIV SCLQGSINYK KLGARLPRGV LLVGPPGTGK TLLARAVAGE AGVPFFSVSA
401: SEFVELFVGR GAARIRDLFN AARKNSPSII FIDELDAVGG KRGRSFNDER DQTLNQLLTE MDGFESDTKV IVIAATNRPE ALDSALCRPG RFSRKVLVAE
501: PDQEGRRKIL AIHLRDVPLE EDAFLICDLV ASLTPGFVGA DLANIVNEAA LLAARRGGEA VAREDIMEAI ERAKFGINDK EARPRTLGNE LSKMFPWMPS
601: LARRNGPDQD GLQGPLGYQT LS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)