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AT1G20830.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : multiple chloroplast division site 1
Curator
Summary (TAIR10)
Encodes MCD1 (MULTIPLE CHLOROPLAST DIVISION SITE 1). Determines the site of chloroplast division in concert with MinD (AT5G24020).
Computational
Description (TAIR10)
MULTIPLE CHLOROPLAST DIVISION SITE 1 (MCD1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: chloroplast fission; LOCATED IN: chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 38 Blast hits to 38 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IF65eggNOG:ENOG4111JAJEMBL:AC069251EMBL:AK118972
EMBL:BT006034EMBL:CP002684EnsemblPlants:AT1G20830EnsemblPlants:AT1G20830.1
entrez:838675GeneID:838675GO:GO:0009706GO:GO:0009941
GO:GO:0010020GO:GO:0016021Gramene:AT1G20830.1hmmpanther:PTHR36317
hmmpanther:PTHR36317:SF1KEGG:ath:AT1G20830OMA:PPVVFLMPaxDb:Q8GWA7
PhylomeDB:Q8GWA7PIR:G86340ProteinModelPortal:Q8GWA7Proteomes:UP000006548
RefSeq:NP_173507.1STRING:3702.AT1G20830.1TAIR:AT1G20830tair10-symbols:MCD1
TMHMM:TMhelixUniGene:At.41684UniProt:Q8GWA7
Coordinates (TAIR10) chr1:+:7242933..7244736
Molecular Weight (calculated) 39418.50 Da
IEP (calculated) 9.34
GRAVY (calculated) -0.62
Length 349 amino acids
Sequence (TAIR10)
(BLAST)
001: MASIDSLQFH SLCNLQSSIG RAKLQNPSSL VIFRRRPVNL NWVQFETKGS FVCKAIGDSS TPDEDIQNTQ SDDNVVVVTA TTQSDIPHDS EYSISRFRSM
101: VTTLPPVVFL MKKCSVNSIW IGVCITATVL VAAIRAYVVR KSRDNQRAGS VADLVRRGQL RSGDRRGISK SLNYEDPFNN PFVKLDKGSS TVEMCGKVYR
201: LAPVTLTEKE QTIHQKRRSR AYQWKRPTIF LKEGDSIPPD VDPDTVRWIP ANHPFATTVS DIDQDLAQNN VYQKQGVPFR IRAEHEAMQK KLEALQNEEK
301: LNNLSIDSQN ARDFQRPYKF SAKLEGENIQ KNSQENHTGN SSSEETHKS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)