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AT4G24810.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.556
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein kinase superfamily protein
Curator
Summary (TAIR10)
similar to ABC1 family protein, contains InterPro domain ABC1 protein (InterPro:IPR004147)
Computational
Description (TAIR10)
Protein kinase superfamily protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147), Protein kinase, catalytic domain (InterPro:IPR000719), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G50330.1); Has 9358 Blast hits to 9339 proteins in 1786 species: Archae - 124; Bacteria - 4346; Metazoa - 407; Fungi - 488; Plants - 713; Viruses - 14; Other Eukaryotes - 3266 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0661eggNOG:KOG1235EMBL:AK176662EMBL:BT026492
EMBL:CP002687EnsemblPlants:AT4G24810EnsemblPlants:AT4G24810.1entrez:828584
ExpressionAtlas:Q67Y06GeneID:828584GO:GO:0004672GO:GO:0005524
Gramene:AT4G24810.1hmmpanther:PTHR10566hmmpanther:PTHR10566:SF72HOGENOM:HOG000029406
InterPro:IPR000719InterPro:IPR004147InterPro:IPR011009Pfam:PF03109
Pfscan:PS50011PhylomeDB:Q67Y06PROSITE:PS50011Proteomes:UP000006548
RefSeq:NP_194212.2SMR:Q67Y06STRING:3702.AT4G24810.2SUPFAM:SSF56112
TAIR:AT4G24810UniGene:At.32317UniProt:Q67Y06
Coordinates (TAIR10) chr4:-:12786791..12789352
Molecular Weight (calculated) 49344.20 Da
IEP (calculated) 9.51
GRAVY (calculated) -0.21
Length 438 amino acids
Sequence (TAIR10)
(BLAST)
001: MNFVKDVNKH EEMWERQHEL AAHKVYSMCS DLGGFFLKIA QILGKPDLAP AAWVRKLVTL CDQAPATPFD AVRVVLEKEL GKSIEQVFET FDEKPLGSAS
101: IAQVHRARVK GDKRDVVVKV QHPGVEKLMM VDIRNLQIFA LYMQKTDIKF DLFSMTKEIE KQIGYEFDFK REANAMEKIR RFLYDNNRKS PVLVPRVFPN
201: LVTRKVLVME FMNGIPILSL GDEMAKRGIN PHGKMAEAAK FNILHSLSQA YGQMILKSGF FHADPHPGNI LIGKGSEVAL LDYGQVKELP DHLRLGYANL
301: VIAIADNNAS LALQSFRELG IATVAKCKNE QQELLQLAKT MFDTEMPPGT TTLQPFSEDS SIKKISVEAF PEELFSVLRT VVLLRGLSVG IGINYSCAQH
401: WRAMAEEALH ASGRLSTGRK QKRRCSSLRR LYPGPRES
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)